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0
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0
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494
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Different colors for different features in IGV
igv color
20 months ago by mark.rose ▴ 50
1
vote
1
reply
897
views
bcftools error on freebayes vcfs
vcf freebayes bcftools
updated 2.0 years ago by 45k • written 3.1 years ago by ▴ 50
0
votes
0
replies
891
views
PacBio's variantCaller's vcf inconsistent with it's consensus sequence
pacbio variant variantCaller vcf consensus
updated 4.5 years ago by 20 • written 4.6 years ago by ▴ 50
1
vote
1
reply
850
views
gatk haplotypecaller report a mush lower coverage than seen in alignment
gatk alignment dp coverage haplotypecaller
4.7 years ago by mark.rose ▴ 50
0
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0
replies
1.2k
views
Comment: C: VCFs appear inconsistent with view of alignment
4.7 years ago by mark.rose ▴ 50
0
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2
replies
1.2k
views
VCFs appear inconsistent with view of alignment
vcf gatk freebayes bbmap igv
4.7 years ago by mark.rose ▴ 50
0
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0
replies
1.4k
views
Comment: C: genome in IGV session file
4.9 years ago by mark.rose ▴ 50
0
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2
replies
1.4k
views
genome in IGV session file
igv session xml genome
4.9 years ago by mark.rose ▴ 50
0
votes
5
replies
5.7k
views
freebayes haplotype calling (phased variants)
freebayes haplotype phase phased variant
updated 5.2 years ago by ▴ 10 • written 9.2 years ago by ▴ 50
0
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0
replies
1.1k
views
Comment: C: anomalous alignment with bowtie2
5.4 years ago by mark.rose ▴ 50
0
votes
3
replies
1.1k
views
anomalous alignment with bowtie2
bowtie bowtie2 blast score alignment
updated 5.4 years ago by 152k • written 5.4 years ago by ▴ 50
2
votes
13
replies
6.0k
views
unexpected bowtie2 unpaired alignment behavior
alignment
updated 3.5 years ago by 45k • written 10.8 years ago by ▴ 50
0
votes
1
reply
2.0k
views
BBMAP fails to find secondary alignment
bbmap secondary
updated 6.6 years ago by 20 • written 6.6 years ago by ▴ 50
0
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0
replies
2.6k
views
Comment: C: BBMAP paired end alignment problem
6.6 years ago by mark.rose ▴ 50
0
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1
reply
2.6k
views
Comment: C: BBMAP paired end alignment problem
6.6 years ago by mark.rose ▴ 50
1
vote
6
replies
2.6k
views
BBMAP paired end alignment problem
BBMAP bbmap align paired-end
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 50
0
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0
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2.6k
views
Comment: C: BBMAP paired end alignment problem
6.6 years ago by mark.rose ▴ 50
0
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0
replies
5.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
7.0 years ago by mark.rose ▴ 50
0
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1
reply
5.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
7.0 years ago by mark.rose ▴ 50
0
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1
reply
5.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
7.0 years ago by mark.rose ▴ 50
1
vote
1
reply
5.0k
views
Answer: A: Picard ExtractIlluminaBarcodes error
updated 7.0 years ago by 152k • written 7.0 years ago by ▴ 50
2
votes
12
replies
5.0k
views
Picard ExtractIlluminaBarcodes error
picard extractilluminabarcodes demultiplex
7.0 years ago by mark.rose ▴ 50
0
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0
replies
5.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
7.0 years ago by mark.rose ▴ 50
0
votes
0
replies
5.0k
views
Comment: C: Picard ExtractIlluminaBarcodes error
7.0 years ago by mark.rose ▴ 50
0
votes
0
replies
2.3k
views
Comment: C: IGV SNP glyph question
7.1 years ago by mark.rose ▴ 50
0
votes
12
replies
2.3k
views
IGV SNP glyph question
igv SNP
updated 7.1 years ago by 16k • written 7.2 years ago by ▴ 50
0
votes
1
reply
2.3k
views
Comment: C: IGV SNP glyph question
updated 7.1 years ago by 45k • written 7.1 years ago by ▴ 50
0
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1
reply
2.3k
views
Comment: C: IGV SNP glyph question
7.1 years ago by mark.rose ▴ 50
0
votes
0
replies
2.3k
views
Comment: C: IGV SNP glyph question
7.1 years ago by mark.rose ▴ 50
0
votes
2
replies
2.3k
views
Comment: C: IGV SNP glyph question
updated 7.1 years ago by 45k • written 7.1 years ago by ▴ 50
0
votes
2
replies
2.3k
views
Comment: C: IGV SNP glyph question
updated 7.1 years ago by 45k • written 7.1 years ago by ▴ 50
0
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0
replies
4.6k
views
Comment: C: bbmap paired-end alignment problem
7.3 years ago by mark.rose ▴ 50
0
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1
reply
4.6k
views
Comment: C: bbmap paired-end alignment problem
7.3 years ago by mark.rose ▴ 50
0
votes
2
replies
4.6k
views
Comment: C: bbmap paired-end alignment problem
updated 7.3 years ago by 152k • written 7.3 years ago by ▴ 50
0
votes
8
replies
4.6k
views
bbmap paired-end alignment problem
bbmap align paired-end
7.3 years ago by mark.rose ▴ 50
0
votes
0
replies
5.7k
views
Comment: C: freebayes haplotype calling (phased variants)
7.3 years ago by mark.rose ▴ 50
0
votes
1
reply
5.7k
views
Comment: C: freebayes haplotype calling (phased variants)
7.3 years ago by mark.rose ▴ 50
0
votes
0
replies
1.8k
views
Comment: C: jellyfish configure script problem
7.4 years ago by mark.rose ▴ 50
0
votes
2
replies
1.8k
views
jellyfish configure script problem
jellyfish configure kraken
7.4 years ago by mark.rose ▴ 50
1
vote
7
replies
2.6k
views
IGV tracks fail to render even after zooming
igv track
updated 7.6 years ago by ▴ 300 • written 7.6 years ago by ▴ 50
0
votes
0
replies
2.6k
views
Comment: C: IGV tracks fail to render even after zooming
7.6 years ago by mark.rose ▴ 50
0
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1
reply
2.6k
views
Comment: C: IGV tracks fail to render even after zooming
7.6 years ago by mark.rose ▴ 50
0
votes
1
reply
2.6k
views
Comment: C: IGV tracks fail to render even after zooming
7.6 years ago by mark.rose ▴ 50
0
votes
5
replies
3.2k
views
calling phased variants
variants phase freebayes platypus problem
updated 8.2 years ago by ▴ 20 • written 9.2 years ago by ▴ 50
1
vote
0
replies
3.4k
views
Comment: C: INDEL left alignment in bam and vcf
8.3 years ago by mark.rose ▴ 50
3
votes
2
replies
3.4k
views
INDEL left alignment in bam and vcf
aligner bowtie bwa blasr indel
updated 8.4 years ago by 20k • written 8.4 years ago by ▴ 50
0
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0
replies
1.6k
views
Comment: C: BG7 usage for bacterial genome annotation
8.6 years ago by mark.rose ▴ 50
0
votes
0
replies
4.0k
views
Comment: C: varscan misses alternate variant alleles
8.6 years ago by mark.rose ▴ 50
0
votes
1
reply
4.0k
views
Comment: C: varscan misses alternate variant alleles
8.6 years ago by mark.rose ▴ 50
0
votes
1
reply
4.0k
views
Comment: C: varscan misses alternate variant alleles
8.6 years ago by mark.rose ▴ 50
81 results • Page 1 of 2
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