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Why don't we apply multiple hypothesis testing correction for multiple bouts of differential expression analysis?
RNA-Seq
updated 17 months ago by • 0 • written 4.5 years ago by ▴ 640
1
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4
replies
4.1k
views
SVA Input: Should SVs be calculated on normalized data?
R SVA RNA-Seq
updated 18 months ago by 45k • written 7.1 years ago by ▴ 640
13
votes
3
replies
6.8k
views
What the heck is going on with this DESeq2 MA Plot?
R MA Plot DESeq2 RNA-Seq
updated 5.2 years ago by ▴ 140 • written 7.9 years ago by ▴ 640
0
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0
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1.9k
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Comment: C: Seurat on both pooled and unpooled samples
5.4 years ago by Kristin Muench ▴ 640
0
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1
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3.0k
views
Comment: C: Nothing will align with HTSeq?
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 640
0
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0
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3.0k
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Comment: C: Nothing will align with HTSeq?
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 640
0
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1
reply
3.0k
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Comment: C: Nothing will align with HTSeq?
updated 5.6 years ago by 45k • written 9.7 years ago by ▴ 640
0
votes
1
reply
3.0k
views
Comment: C: Nothing will align with HTSeq?
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 640
0
votes
0
replies
4.1k
views
Comment: C: SVA Input: Should SVs be calculated on normalized data?
5.9 years ago by Kristin Muench ▴ 640
0
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0
replies
2.8k
views
Comment: C: miRNAs detected in bulk mRNA-Seq data - how to annotate?
6.0 years ago by Kristin Muench ▴ 640
6
votes
9
replies
2.8k
views
miRNAs detected in bulk mRNA-Seq data - how to annotate?
RNA-Seq miRNA R
6.0 years ago by Kristin Muench ▴ 640
0
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0
replies
2.8k
views
Comment: C: miRNAs detected in bulk mRNA-Seq data - how to annotate?
6.0 years ago by Kristin Muench ▴ 640
0
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1
reply
2.8k
views
Comment: C: miRNAs detected in bulk mRNA-Seq data - how to annotate?
6.0 years ago by Kristin Muench ▴ 640
1
vote
0
replies
4.9k
views
Answer: A: Normalizing using Seurat with large numbers of samples
6.2 years ago by Kristin Muench ▴ 640
1
vote
1
reply
4.9k
views
Normalizing using Seurat with large numbers of samples
single cell scRNA-Seq R
6.2 years ago by Kristin Muench ▴ 640
1
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1
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5.2k
views
Answer: A: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
7
votes
19
replies
5.2k
views
GATK failing to find any variants - how to troubleshoot?
GATK RNA-Seq
6.2 years ago by Kristin Muench ▴ 640
0
votes
0
replies
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
0
votes
0
replies
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
0
votes
1
reply
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
0
votes
1
reply
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
0
votes
2
replies
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
0
votes
1
reply
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
0
votes
1
reply
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
1
vote
0
replies
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
0
votes
1
reply
5.2k
views
Comment: C: GATK failing to find any variants - how to troubleshoot?
6.2 years ago by Kristin Muench ▴ 640
1
vote
1
reply
4.5k
views
Comment: C: Normal to have high variability in Broad Institute's GSEA Output?
6.3 years ago by Kristin Muench ▴ 640
8
votes
11
replies
4.5k
views
Normal to have high variability in Broad Institute's GSEA Output?
GSEA GO
6.3 years ago by Kristin Muench ▴ 640
4
votes
0
replies
4.5k
views
Answer: A: Normal to have high variability in Broad Institute's GSEA Output?
6.3 years ago by Kristin Muench ▴ 640
0
votes
1
reply
1.9k
views
Comment: C: Seurat on both pooled and unpooled samples
6.4 years ago by Kristin Muench ▴ 640
1
vote
4
replies
1.9k
views
Seurat on both pooled and unpooled samples
scRNA-Seq RNA-Seq Seurat
updated 6.4 years ago by 45k • written 6.4 years ago by ▴ 640
1
vote
0
replies
7.2k
views
Answer: A: In Seurat, what data is VlnPlot() plotting?
6.4 years ago by Kristin Muench ▴ 640
1
vote
1
reply
7.2k
views
In Seurat, what data is VlnPlot() plotting?
scRNA-Seq Seurat RNA-Seq single cell
6.4 years ago by Kristin Muench ▴ 640
1
vote
0
replies
8.2k
views
Comment: C: Handling biological replicates across batches in DESeq2
6.6 years ago by Kristin Muench ▴ 640
0
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1
reply
8.2k
views
Comment: C: Handling biological replicates across batches in DESeq2
6.6 years ago by Kristin Muench ▴ 640
11
votes
13
replies
8.2k
views
Handling biological replicates across batches in DESeq2
deseq2 rna-seq R deseq RNA-Seq
6.6 years ago by Kristin Muench ▴ 640
1
vote
0
replies
8.2k
views
Answer: A: Handling biological replicates across batches in DESeq2
6.6 years ago by Kristin Muench ▴ 640
0
votes
1
reply
8.2k
views
Comment: C: Handling biological replicates across batches in DESeq2
6.6 years ago by Kristin Muench ▴ 640
0
votes
2
replies
8.2k
views
Comment: C: Handling biological replicates across batches in DESeq2
6.6 years ago by Kristin Muench ▴ 640
0
votes
0
replies
8.2k
views
Comment: C: Handling biological replicates across batches in DESeq2
6.6 years ago by Kristin Muench ▴ 640
0
votes
0
replies
8.7k
views
Comment: C: "Duplicate rownames not allowed" when the rownames are not duplicated
6.7 years ago by Kristin Muench ▴ 640
1
vote
3
replies
8.7k
views
"Duplicate rownames not allowed" when the rownames are not duplicated
DESeq2
updated 6.7 years ago by ★ 2.6k • written 6.7 years ago by ▴ 640
7
votes
1
reply
4.2k
views
Why can't I replicate DESeq's Log2FC calculation?
deseq2 rnaseq RNA-Seq deseq
updated 6.7 years ago by 45k • written 9.3 years ago by ▴ 640
0
votes
0
replies
1.7k
views
Comment: C: [DESeq] Collapsing replicate across sequencing batches?
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 640
0
votes
0
replies
7.7k
views
Answer: A: Heatmap with normalised count from DESEQ2
6.7 years ago by Kristin Muench ▴ 640
0
votes
2
replies
1.7k
views
[DESeq] Collapsing replicate across sequencing batches?
RNA-Seq DESeq
6.7 years ago by Kristin Muench ▴ 640
15
votes
10
replies
10k
views
6 follow
How many reads should I expect for paired end reads when coverage = 30 million?
RNA-Seq
updated 6.8 years ago by 20 • written 9.7 years ago by ▴ 640
1
vote
1
reply
4.5k
views
Comment: C: Normal to have high variability in Broad Institute's GSEA Output?
6.8 years ago by Kristin Muench ▴ 640
0
votes
1
reply
4.5k
views
Comment: C: Normal to have high variability in Broad Institute's GSEA Output?
6.8 years ago by Kristin Muench ▴ 640
0
votes
1
reply
4.5k
views
Comment: C: Normal to have high variability in Broad Institute's GSEA Output?
6.8 years ago by Kristin Muench ▴ 640
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