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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
6.2 years ago by Kristin Muench ▴ 640
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0
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4.2k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
6.2 years ago by Kristin Muench ▴ 640
0
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0
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4.2k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
6.2 years ago by Kristin Muench ▴ 640
0
votes
0
replies
4.2k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
6.2 years ago by Kristin Muench ▴ 640
0
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0
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4.2k
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Comment: C: Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
6.2 years ago by Kristin Muench ▴ 640
2
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7
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4.2k
views
Visualizing alignment of kallisto .bam files to hg19 (and custom plasmids)
IGV kallisto RNA-Seq
updated 6.2 years ago by ▴ 130 • written 6.2 years ago by ▴ 640
11
votes
36
replies
6.5k
views
Design in DESeq: Can you combine explicit and implicit batch effect correction in (SVA+Metadata Variables)?
SVA batch-effect DESeq2 R
updated 7 months ago by 44k • written 6.3 years ago by ▴ 640
0
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1
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16k
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Comment: A: How to download human reference transcriptome (hg19)
6.3 years ago by Kristin Muench ▴ 640
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0
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6.5k
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Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
6.3 years ago by Kristin Muench ▴ 640
0
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1
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6.5k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
6.3 years ago by Kristin Muench ▴ 640
1
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0
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4.2k
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Answer: A: Heat map of DE genes identified in Graph based clustering of ScRNA-Seq
6.3 years ago by Kristin Muench ▴ 640
0
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1
reply
6.5k
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Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
6.3 years ago by Kristin Muench ▴ 640
0
votes
1
reply
9.0k
views
Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
6.3 years ago by Kristin Muench ▴ 640
1
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0
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9.0k
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Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
6.3 years ago by Kristin Muench ▴ 640
0
votes
1
reply
6.5k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
6.3 years ago by Kristin Muench ▴ 640
0
votes
0
replies
6.5k
views
Comment: C: Design in DESeq: Can you combine explicit and implicit batch effect correction i
6.3 years ago by Kristin Muench ▴ 640
0
votes
1
reply
5.0k
views
Comment: C: kallisto pseudoaligned bam files to IGV
6.3 years ago by Kristin Muench ▴ 640
0
votes
1
reply
14k
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Comment: C: Making a heatmap: sample vs. fold change
6.3 years ago by Kristin Muench ▴ 640
4
votes
6
replies
14k
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Making a heatmap: sample vs. fold change
RNA-Seq R heatmap DESeq2
updated 3.2 years ago by ▴ 10 • written 6.3 years ago by ▴ 640
0
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0
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2.0k
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Comment: C: Help understanding the meaning of variables in DESeq design matrix
6.3 years ago by Kristin Muench ▴ 640
3
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2
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2.0k
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Help understanding the meaning of variables in DESeq design matrix
DESeq2 RNA-Seq R
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 640
0
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0
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7.2k
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Comment: C: Multi-factor analysis with DESeq: which approach is correct?
6.3 years ago by Kristin Muench ▴ 640
0
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1
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7.2k
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Comment: C: Multi-factor analysis with DESeq: which approach is correct?
6.3 years ago by Kristin Muench ▴ 640
0
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1
reply
7.2k
views
Comment: C: Multi-factor analysis with DESeq: which approach is correct?
6.3 years ago by Kristin Muench ▴ 640
4
votes
6
replies
7.2k
views
Multi-factor analysis with DESeq: which approach is correct?
RNA-Seq DESeq2 R
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 640
18
votes
9
replies
8.7k
views
Error in (function...) thrown by WGCNA tutorial (R)
WGCNA RNA-Seq R
updated 6.5 years ago by ▴ 90 • written 6.7 years ago by ▴ 640
0
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1
reply
4.8k
views
Comment: C: Kallisto will not produce .bam files
6.6 years ago by Kristin Muench ▴ 640
9
votes
15
replies
4.8k
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Kallisto will not produce .bam files
kallisto RNA-Seq
updated 6.6 years ago by 88k • written 6.6 years ago by ▴ 640
33
votes
5
replies
17k
views
9 follow
Forum: How do I explain to my non-bioinformatician labmates how to interpret principal components?
RNA-Seq communication analysis pca
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 640
10
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6
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6.2k
views
Should kallisto take hours to run?
kallisto RNA-Seq
6.7 years ago by Kristin Muench ▴ 640
0
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2
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6.2k
views
Comment: C: Should kallisto take hours to run?
6.7 years ago by Kristin Muench ▴ 640
0
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1
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6.2k
views
Comment: C: Should kallisto take hours to run?
6.7 years ago by Kristin Muench ▴ 640
1
vote
1
reply
8.7k
views
Comment: C: Error in (function...) thrown by WGCNA tutorial (R)
6.7 years ago by Kristin Muench ▴ 640
1
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0
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4.3k
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Comment: C: Adding plasmid sequences to gtf file
6.7 years ago by Kristin Muench ▴ 640
0
votes
0
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3.6k
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Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
6.7 years ago by Kristin Muench ▴ 640
2
votes
6
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3.6k
views
[STAR] Why are there so many more mapped reads than unmapped reads in my .sam output file?
RNA-Seq star
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by ▴ 640
0
votes
0
replies
3.6k
views
Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
6.7 years ago by Kristin Muench ▴ 640
0
votes
1
reply
3.6k
views
Comment: C: [STAR] Why are there so many more mapped reads than unmapped reads in my .sam ou
6.7 years ago by Kristin Muench ▴ 640
0
votes
1
reply
4.3k
views
Comment: C: Adding plasmid sequences to gtf file
6.7 years ago by Kristin Muench ▴ 640
0
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0
replies
4.3k
views
Comment: C: Adding plasmid sequences to gtf file
6.7 years ago by Kristin Muench ▴ 640
4
votes
6
replies
4.3k
views
Adding plasmid sequences to gtf file
RNA-Seq
6.7 years ago by Kristin Muench ▴ 640
0
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0
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2.9k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
6.8 years ago by Kristin Muench ▴ 640
4
votes
6
replies
2.9k
views
How to align .fastq files to an Addgene vector sequence?
RNA-Seq alignment
6.8 years ago by Kristin Muench ▴ 640
0
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0
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2.9k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
6.8 years ago by Kristin Muench ▴ 640
0
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0
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2.9k
views
Comment: C: How to align .fastq files to an Addgene vector sequence?
6.8 years ago by Kristin Muench ▴ 640
0
votes
0
replies
3.4k
views
RNA-Seq Normalization and Batch Correction
RNA-Seq R
7.3 years ago by Kristin Muench ▴ 640
0
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0
replies
6.3k
views
Comment: C: What the heck is going on with this DESeq2 MA Plot?
7.4 years ago by Kristin Muench ▴ 640
0
votes
6
replies
2.8k
views
Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcripts?
RNA-Seq
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 640
0
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0
replies
1.5k
views
Is there a way to normalize for input library size/total RNA in microarray?
microarray
7.9 years ago by Kristin Muench ▴ 640
3
votes
2
replies
2.6k
views
Is it possible to compare 3SEQ and RNA-Seq data?
RNA-Seq 3SEQ DE
updated 2.9 years ago by 44k • written 10.2 years ago by ▴ 640
130 results • Page 2 of 3
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