Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.6k
views
How to deal with undetected probes in microarray data?
meta-analysis microarray R
updated 8.5 years ago by 27k • written 8.5 years ago by ▴ 640
1
vote
0
replies
3.9k
views
Comment: C: Low DE genes in DESeq2 (update PCA plots)
8.6 years ago by Kristin Muench ▴ 640
0
votes
0
replies
1.6k
views
I have a list of ABI microarray probes with "signal values". How can I tell if it's been background corrected?
microarray ABI background correction GEO
8.6 years ago by Kristin Muench ▴ 640
3
votes
1
reply
3.9k
views
Answer: A: Low DE genes in DESeq2
8.6 years ago by Kristin Muench ▴ 640
0
votes
1
reply
2.7k
views
Comment: C: Is it problematic to use ANOVA in microarray meta-analysis?
8.6 years ago by Kristin Muench ▴ 640
1
vote
3
replies
2.7k
views
Is it problematic to use ANOVA in microarray meta-analysis?
microarray stats ANOVA
updated 8.6 years ago by 104k • written 8.6 years ago by ▴ 640
0
votes
0
replies
1.5k
views
Comparing gene expression across microarrays
microarray
8.7 years ago by Kristin Muench ▴ 640
7
votes
2
replies
5.8k
views
List of Ensembl Transcript IDs corresponding to protein-coding genes
RNA-Seq PCA ensembl
updated 8.8 years ago by 7.6k • written 8.8 years ago by ▴ 640
2
votes
12
replies
2.6k
views
Nothing will align with HTSeq?
RNA-Seq htseq
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 640
0
votes
1
reply
9.0k
views
Comment: C: How many reads should I expect for paired end reads when coverage = 30 million?
9.1 years ago by Kristin Muench ▴ 640
3
votes
4
replies
12k
views
Bowtie2: Why won't it recognize my index files?
bowtie2
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 640
0
votes
2
replies
3.1k
views
Comment: C: Which .gtf file should I use when aligning/counting total RNA?
9.1 years ago by Kristin Muench ▴ 640
0
votes
4
replies
3.1k
views
Which .gtf file should I use when aligning/counting total RNA?
RNA-Seq
updated 2.2 years ago by 44k • written 9.1 years ago by ▴ 640
0
votes
1
reply
2.6k
views
Comment: C: Nothing will align with HTSeq?
9.2 years ago by Kristin Muench ▴ 640
2
votes
4
replies
4.3k
views
Extracting counts from RNA-Seq: trouble with bedtools + multicov
bedtools RNA-Seq multicov
updated 2.2 years ago by 44k • written 9.2 years ago by ▴ 640
0
votes
0
replies
4.3k
views
Comment: C: Extracting counts from RNA-Seq: trouble with bedtools + multicov
9.2 years ago by Kristin Muench ▴ 640
0
votes
1
reply
2.6k
views
Comment: C: How many unique human Entrez and HUGO gene IDs are there? What number to use for
9.4 years ago by Kristin Muench ▴ 640
1
vote
3
replies
2.6k
views
How many unique human Entrez and HUGO gene IDs are there? What number to use for Fisher's exact test?
entrez R hugo
updated 23 months ago by 44k • written 9.4 years ago by ▴ 640
0
votes
0
replies
3.6k
views
How to make lumi accept .txt data?
microarray lumi
updated 22 months ago by 44k • written 9.5 years ago by ▴ 640
0
votes
0
replies
4.9k
views
Comment: Comment: Determining gene expression with 2 biological replicates and RPKM data only
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 640
0
votes
0
replies
4.9k
views
Comment: Comment: Determining gene expression with 2 biological replicates and RPKM data only
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 640
0
votes
0
replies
2.8k
views
Comment: C: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
9.8 years ago by Kristin Muench ▴ 640
0
votes
0
replies
2.8k
views
Comment: C: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
9.8 years ago by Kristin Muench ▴ 640
0
votes
0
replies
2.8k
views
Comment: C: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
9.8 years ago by Kristin Muench ▴ 640
0
votes
1
reply
4.9k
views
Comment: Comment: Determining gene expression with 2 biological replicates and RPKM data only
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 640
3
votes
5
replies
4.9k
views
Determining gene expression with 2 biological replicates and RPKM data only
RPKM RNA-Seq
updated 2.6 years ago by 44k • written 9.8 years ago by ▴ 640
0
votes
0
replies
12k
views
Comment: C: Bowtie2: Why won't it recognize my index files?
9.9 years ago by Kristin Muench ▴ 640
0
votes
1
reply
4.3k
views
Comment: Comment: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 640
0
votes
1
reply
4.3k
views
Comment: Comment: I have demultiplexed files for a single biological replicate. When to combine th
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 640
3
votes
4
replies
4.3k
views
I have demultiplexed files for a single biological replicate. When to combine them in pipeline?
FastQC RNA-Seq
updated 2.7 years ago by 44k • written 9.9 years ago by ▴ 640
130 results • Page 3 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6