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2
votes
1
reply
319
views
What is trait discoverability?
snp phenotype gene trait
updated 4 months ago by 149k • written 4 months ago by ▴ 60
0
votes
1
reply
451
views
Multi allelic variants extraction with plink
plink multiallelic-variants
updated 6 months ago by 11k • written 6 months ago by ▴ 60
0
votes
1
reply
6.6k
views
Comment: Comment: Obtain chromosome, position, and alleles based on a list of SNP names
6 months ago by _quantum_girl_ ▴ 60
0
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1
reply
6.6k
views
Comment: Comment: Obtain chromosome, position, and alleles based on a list of SNP names
6 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
982
views
Comment: Comment: Get position in GRCh38 from rsid
6 months ago by _quantum_girl_ ▴ 60
0
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1
reply
982
views
Comment: Comment: Get position in GRCh38 from rsid
6 months ago by _quantum_girl_ ▴ 60
0
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1
reply
13k
views
Comment: Comment: Get Snp Position From A Python Interface.
6 months ago by _quantum_girl_ ▴ 60
2
votes
1
reply
332
views
Filter vcf file by position AND alternative allele
bcftools vcf filter
updated 6 months ago by 12k • written 7 months ago by ▴ 60
1
vote
5
replies
982
views
Get position in GRCh38 from rsid
snp rsid location
updated 6 months ago by 8.8k • written 7 months ago by ▴ 60
0
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0
replies
544
views
Comment: Comment: Fastest way to get rsid from SNP position
7 months ago by _quantum_girl_ ▴ 60
0
votes
3
replies
544
views
Fastest way to get rsid from SNP position
snp dbsnp annotation
updated 7 months ago by 165k • written 7 months ago by ▴ 60
0
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0
replies
633
views
Comment: Comment: Where can I download dbsnp in hg19?
7 months ago by _quantum_girl_ ▴ 60
0
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1
reply
633
views
Comment: Comment: Where can I download dbsnp in hg19?
7 months ago by _quantum_girl_ ▴ 60
3
votes
4
replies
633
views
Where can I download dbsnp in hg19?
dnsnp hg19
7 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
378
views
Comment: Comment: Detecting compound heterozygous
7 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
378
views
Detecting compound heterozygous
haplotype heterozygous
7 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
293
views
Good books or review papers on mendelian randomization and eQTLs?
eQTL randomization mendelian
7 months ago by _quantum_girl_ ▴ 60
0
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1
reply
1.1k
views
Comment: Comment: How to get gene name for 900k SNPs
8 months ago by _quantum_girl_ ▴ 60
0
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1
reply
1.1k
views
Comment: Comment: How to get gene name for 900k SNPs
8 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
1.1k
views
Comment: Comment: How to get gene name for 900k SNPs
8 months ago by _quantum_girl_ ▴ 60
9
votes
9
replies
1.1k
views
How to get gene name for 900k SNPs
biomart entrez pyensembl snp gene
updated 8 months ago by 165k • written 8 months ago by ▴ 60
1
vote
0
replies
1.1k
views
Answer: Answer: How to get gene name for 900k SNPs
8 months ago by _quantum_girl_ ▴ 60
8
votes
6
replies
1.3k
views
Why is UCSC lift over failing to convert a specific position?
UCSC liftover
updated 8 months ago by ▴ 600 • written 8 months ago by ▴ 60
0
votes
0
replies
700
views
Comment: Comment: QC exclusion of A/T or G/C alleles to avoid strand issues
10 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
700
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control SNV QC SNP
10 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
225
views
Databases with GoF (Gain of Function) annotations.
gof lof gain-of-function
10 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
814
views
Comment: Comment: How to choose --hwe threshold?
12 months ago by _quantum_girl_ ▴ 60
0
votes
2
replies
814
views
How to choose --hwe threshold?
plink hardy-weinberg quality-control qc
12 months ago by _quantum_girl_ ▴ 60
0
votes
1
reply
833
views
What do HAP A1 and HAP A2 mean in plink --freqx output?
plink
updated 16 months ago by ★ 3.0k • written 16 months ago by ▴ 60
0
votes
0
replies
434
views
Regenie to get burden
Regenie
updated 16 months ago by 44k • written 16 months ago by ▴ 60
5
votes
3
replies
874
views
Where to find info on VCF file format?
bcftools vcf
updated 16 months ago by 44k • written 16 months ago by ▴ 60
0
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1
reply
2.3k
views
Comment: Comment: How to filter vcf file by MAF using bcftools?
16 months ago by _quantum_girl_ ▴ 60
2
votes
4
replies
2.3k
views
How to filter vcf file by MAF using bcftools?
bcftools vcf
updated 16 months ago by 44k • written 16 months ago by ▴ 60
3
votes
4
replies
813
views
Unable to build applet in DNAnexus, .jar file not found
dnanexus applet
updated 17 months ago by 4.8k • written 17 months ago by ▴ 60
3
votes
2
replies
781
views
How to retrieve LoF and missense variants in WES data?
bcftools variants plink SNPs
updated 17 months ago by ▴ 130 • written 17 months ago by ▴ 60
1
vote
1
reply
758
views
Any online course for learning how to use PLINK?
plink
updated 17 months ago by ★ 3.0k • written 17 months ago by ▴ 60
3
votes
3
replies
1.0k
views
How to find variants in a specific gene in a cohort of 500k+ individuals?
variants plink SNPs CNV
updated 17 months ago by 165k • written 17 months ago by ▴ 60
0
votes
0
replies
381
views
How to find commutation using plink?
commutation plink
17 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
5.4k
views
Comment: Comment: From Imputed Snps To Cnvs
20 months ago by _quantum_girl_ ▴ 60
0
votes
0
replies
382
views
Methylation (Illumina arrays or Whole-genome bisulfite sequencing WBS) and WGS datasets?
array wgs methylation wbs dna
20 months ago by _quantum_girl_ ▴ 60
40 results • Page 1 of 1
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