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2
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1
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675
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Answer: Answer: merging tetraploid vcf files through bcftools
7 months ago by Axzd ▴ 80
0
votes
1
reply
342
views
Pileup of mapped diploid
diploid Pileup
8 months ago by Axzd ▴ 80
0
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0
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342
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Answer: Answer: Pileup of mapped diploid
8 months ago by Axzd ▴ 80
0
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1
reply
920
views
Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
11 months ago by Axzd ▴ 80
0
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0
replies
920
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Comment: Comment: Calling variants from a diploid assembly mapped on a haploid reference, tool sug
11 months ago by Axzd ▴ 80
2
votes
5
replies
920
views
Calling variants from a diploid assembly mapped on a haploid reference, tool suggestion?
SNP phased diploid
updated 11 months ago by 147k • written 11 months ago by ▴ 80
4
votes
2
replies
882
views
BBtools bug in reporting the number of substitutions in the console output, it seems to report insanely high rates of heterozygosity
SNP bbtools
updated 11 months ago by ★ 5.0k • written 11 months ago by ▴ 80
0
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0
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2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
0
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1
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2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
0
votes
1
reply
2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
0
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1
reply
2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
0
votes
1
reply
2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
0
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1
reply
2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
0
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0
replies
2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
0
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1
reply
2.4k
views
Comment: Comment: Bbtools callvariant multisample mode, + base recalibration
12 months ago by Axzd ▴ 80
15
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20
replies
2.4k
views
Bbtools callvariant multisample mode, + base recalibration
Bbtools
12 months ago by Axzd ▴ 80
0
votes
1
reply
1.1k
views
Comment: Comment: BBtools callvariants.sh
13 months ago by Axzd ▴ 80
0
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0
replies
1.1k
views
Comment: Comment: BBtools callvariants.sh
13 months ago by Axzd ▴ 80
2
votes
4
replies
1.1k
views
BBtools callvariants.sh
SNP bbtools alignment
updated 13 months ago by 20k • written 17 months ago by ▴ 80
0
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0
replies
1.2k
views
Comment: Comment: How to annotate function of genes from non-model organism
13 months ago by Axzd ▴ 80
0
votes
0
replies
805
views
Comment: Comment: Help me understand "for stripped" in bcftools isec output
13 months ago by Axzd ▴ 80
1
vote
0
replies
815
views
Answer: Answer: GWAS in python?
13 months ago by Axzd ▴ 80
1
vote
2
replies
805
views
Help me understand "for stripped" in bcftools isec output
bcftools SNP
updated 13 months ago by 147k • written 13 months ago by ▴ 80
0
votes
1
reply
1.2k
views
Answer: Answer: How to annotate function of genes from non-model organism
13 months ago by Axzd ▴ 80
0
votes
0
replies
897
views
Comment: Comment: Most sensible way to find private SNPs from a multisamples vcf with bcftools
13 months ago by Axzd ▴ 80
0
votes
0
replies
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
1
vote
3
replies
897
views
Most sensible way to find private SNPs from a multisamples vcf with bcftools
bcftools SNP vcf
13 months ago by Axzd ▴ 80
0
votes
1
reply
897
views
Answer: Answer: Most sensible way to find private SNPs from a multisamples vcf with bcftools
13 months ago by Axzd ▴ 80
20
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29
replies
3.3k
views
6 follow
Using bcftools to find unique alt homozygous sites
bcftools
updated 13 months ago by 164k • written 13 months ago by ▴ 80
0
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0
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42k
views
Comment: Comment: Converting a VCF with SNPs and indels to BED format
13 months ago by Axzd ▴ 80
0
votes
0
replies
1.1k
views
Comment: Comment: Find groups of SNP in a multi sample VCF with bcftools
13 months ago by Axzd ▴ 80
0
votes
0
replies
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
0
votes
1
reply
42k
views
Comment: Comment: Converting a VCF with SNPs and indels to BED format
13 months ago by Axzd ▴ 80
0
votes
0
replies
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
0
votes
1
reply
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
0
votes
1
reply
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
0
votes
0
replies
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
0
votes
1
reply
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
0
votes
0
replies
3.3k
views
Comment: Comment: Using bcftools to find unique alt homozygous sites
13 months ago by Axzd ▴ 80
0
votes
0
replies
678
views
Answer: Answer: Filter vcf SNPs by sample GT value
13 months ago by Axzd ▴ 80
1
vote
1
reply
1.2k
views
Answer: Answer: Adapters finder
13 months ago by Axzd ▴ 80
0
votes
1
reply
759
views
Comment: Comment: Missing BUSCOs are actually present in the transcriptome based on BLASTx?
13 months ago by Axzd ▴ 80
0
votes
0
replies
749
views
Comment: Comment: HiFi read alignment with vg giraffe
13 months ago by Axzd ▴ 80
0
votes
0
replies
656
views
Comment: Comment: How would you define homologous windows between 2 genomes?
13 months ago by Axzd ▴ 80
2
votes
3
replies
656
views
How would you define homologous windows between 2 genomes?
genomics comparison mapping
13 months ago by Axzd ▴ 80
2
votes
1
reply
597
views
Reducing BWA mem seed length when a genome is highly heterozygous?
alignment bwa
updated 13 months ago by 20k • written 14 months ago by ▴ 80
0
votes
0
replies
373
views
Fastest way to find private SNPs for each sample
SNP
14 months ago by Axzd ▴ 80
0
votes
1
reply
480
views
Expanding gVCF box from GATK
GATK VCF gVCF
updated 16 months ago by 22k • written 16 months ago by ▴ 80
0
votes
1
reply
927
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
16 months ago by Axzd ▴ 80
0
votes
0
replies
927
views
Comment: Comment: Is there a more elegant way to print the list of all regions from a bed file?
16 months ago by Axzd ▴ 80
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