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3
votes
6
replies
4.1k
views
Remove both pair end reads with low mapping quality using Samtools
mapping-quality samtools
updated 3.0 years ago by 44k • written 10.2 years ago by ▴ 640
0
votes
2
replies
4.9k
views
Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 5.1 years ago by 44k • written 9.0 years ago by ▴ 640
0
votes
0
replies
7.1k
views
Comment: C: Identify point mutations from each read in sam files
updated 5.3 years ago by 44k • written 9.4 years ago by ▴ 640
1
vote
0
replies
1.5k
views
Get Pseudotime Matrix in Monocole2?
monocole2
5.4 years ago by DVA ▴ 640
2
votes
2
replies
1.1k
views
Check Conservation of a Given Protein Domain
blast
updated 5.9 years ago by ★ 1.0k • written 5.9 years ago by ▴ 640
0
votes
0
replies
1.6k
views
Comment: C: What happens when SNV caller looks at a SV (e.g. deletion) region?
6.0 years ago by DVA ▴ 640
4
votes
3
replies
1.6k
views
What happens when SNV caller looks at a SV (e.g. deletion) region?
snv deletion
updated 6.0 years ago by 47k • written 6.0 years ago by ▴ 640
0
votes
1
reply
1.2k
views
RNA Expression Pathway Database
database
updated 6.0 years ago by 20 • written 6.2 years ago by ▴ 640
0
votes
2
replies
1.5k
views
Differential Binding in Partek
ChIP-Seq ATAC-seq Partek
updated 6.0 years ago by ▴ 30 • written 6.0 years ago by ▴ 640
0
votes
0
replies
1.2k
views
Comment: C: How to handle RNASeq reads that can map to both human and mouse ref (e.g. conser
6.2 years ago by DVA ▴ 640
1
vote
2
replies
1.2k
views
How to handle RNASeq reads that can map to both human and mouse ref (e.g. conserved gene regions)?
alignment hisat2
updated 6.2 years ago by 13k • written 6.2 years ago by ▴ 640
0
votes
0
replies
2.2k
views
Comment: C: CIGAR and sequence length are inconsistent after HISAT alignment
6.3 years ago by DVA ▴ 640
0
votes
2
replies
2.2k
views
CIGAR and sequence length are inconsistent after HISAT alignment
hisat alignment rnaseq
updated 6.3 years ago by 105k • written 6.3 years ago by ▴ 640
1
vote
0
replies
1.5k
views
Comment: C: Count 0, 5, 20 covered sites in bam
6.4 years ago by DVA ▴ 640
0
votes
0
replies
1.5k
views
Comment: C: Count 0, 5, 20 covered sites in bam
6.4 years ago by DVA ▴ 640
4
votes
6
replies
1.5k
views
Count 0, 5, 20 covered sites in bam
wgs bam
updated 6.4 years ago by 165k • written 6.4 years ago by ▴ 640
0
votes
0
replies
1.5k
views
Comment: C: Count 0, 5, 20 covered sites in bam
6.4 years ago by DVA ▴ 640
1
vote
2
replies
1.2k
views
Extract the overlap of well-covered regions across multiple samples
coverage WGS
6.6 years ago by DVA ▴ 640
0
votes
0
replies
1.9k
views
Comment: C: Pathway enrichment with differential expression p-values
6.7 years ago by DVA ▴ 640
3
votes
2
replies
1.9k
views
Pathway enrichment with differential expression p-values
gene enrichment
updated 6.7 years ago by 8.4k • written 6.7 years ago by ▴ 640
1
vote
1
reply
1.5k
views
GSEA Phenotype Table Input
gsea
updated 6.7 years ago by ▴ 180 • written 6.7 years ago by ▴ 640
0
votes
0
replies
1.9k
views
Multiple factors & batch effects - DESeq2
deseq2
6.7 years ago by DVA ▴ 640
0
votes
1
reply
3.9k
views
Comment: C: Horizontal lines in MA plot (DESeq2)
6.8 years ago by DVA ▴ 640
2
votes
3
replies
3.9k
views
Horizontal lines in MA plot (DESeq2)
deseq2
6.8 years ago by DVA ▴ 640
0
votes
0
replies
5.2k
views
Comment: C: Which annotation file to use
6.8 years ago by DVA ▴ 640
0
votes
0
replies
5.2k
views
Comment: C: Which annotation file to use
6.8 years ago by DVA ▴ 640
0
votes
0
replies
7.1k
views
Comment: C: High Unassigned Ambiguity in Feature Counts
6.8 years ago by DVA ▴ 640
0
votes
2
replies
5.2k
views
Comment: C: Which annotation file to use
6.8 years ago by DVA ▴ 640
0
votes
1
reply
5.2k
views
Comment: C: Which annotation file to use
6.8 years ago by DVA ▴ 640
4
votes
10
replies
5.2k
views
Which annotation file to use
RNA-Seq
updated 6.8 years ago by 35k • written 6.8 years ago by ▴ 640
0
votes
0
replies
5.2k
views
Comment: C: Which annotation file to use
6.8 years ago by DVA ▴ 640
0
votes
1
reply
7.1k
views
Comment: C: High Unassigned Ambiguity in Feature Counts
6.8 years ago by DVA ▴ 640
4
votes
4
replies
7.1k
views
High Unassigned Ambiguity in Feature Counts
feature count
updated 6.8 years ago by ★ 3.9k • written 6.8 years ago by ▴ 640
0
votes
1
reply
2.3k
views
Comment: C: Mask gtf file for cufflinks
6.8 years ago by DVA ▴ 640
1
vote
0
replies
2.3k
views
Comment: C: Mask gtf file for cufflinks
6.8 years ago by DVA ▴ 640
0
votes
1
reply
2.3k
views
Comment: C: Mask gtf file for cufflinks
6.8 years ago by DVA ▴ 640
3
votes
6
replies
2.3k
views
Mask gtf file for cufflinks
RNA-Seq
6.8 years ago by DVA ▴ 640
2
votes
0
replies
2.8k
views
Comment: C: HISAT2 tmo and rna-strandness options not working as expected
6.9 years ago by DVA ▴ 640
9
votes
3
replies
2.8k
views
HISAT2 tmo and rna-strandness options not working as expected
RNA-Seq
updated 5 weeks ago by • 0 • written 6.9 years ago by ▴ 640
0
votes
1
reply
2.6k
views
Comment: C: Reasons for polyA in RNA Seq Reads
6.9 years ago by DVA ▴ 640
0
votes
3
replies
2.6k
views
Reasons for polyA in RNA Seq Reads
RNA-Seq
6.9 years ago by DVA ▴ 640
0
votes
0
replies
2.4k
views
Comment: C: Base pair order in sequencer vs in fastq
6.9 years ago by DVA ▴ 640
0
votes
1
reply
6.1k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.9 years ago by DVA ▴ 640
4
votes
2
replies
2.4k
views
Base pair order in sequencer vs in fastq
sequencing
updated 6.9 years ago by 16k • written 6.9 years ago by ▴ 640
0
votes
1
reply
6.1k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.9 years ago by DVA ▴ 640
0
votes
1
reply
6.1k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.9 years ago by DVA ▴ 640
0
votes
0
replies
6.1k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.9 years ago by DVA ▴ 640
0
votes
1
reply
6.1k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.9 years ago by DVA ▴ 640
0
votes
0
replies
6.1k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.9 years ago by DVA ▴ 640
10
votes
13
replies
6.1k
views
Best way to trim PolyA in RNA Seq reads?
RNA-Seq
updated 6.9 years ago by 47k • written 6.9 years ago by ▴ 640
152 results • Page 1 of 4
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