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1
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2
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1.6k
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best automated method (unix commandline) to get genome-assembly-accession number for given protein-accession-number (ncbi)
ncbi blast Assembly
updated 3.6 years ago by • 0 • written 4.4 years ago by ▴ 470
0
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1
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1.9k
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Comment: C: esearch command-line tool only returns summary of hits?
5.1 years ago by JV ▴ 470
0
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1
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1.9k
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Comment: C: esearch command-line tool only returns summary of hits?
5.1 years ago by JV ▴ 470
5
votes
6
replies
1.9k
views
esearch command-line tool only returns summary of hits?
ncbi e-utils esearch assembly
updated 5.1 years ago by ★ 3.8k • written 5.1 years ago by ▴ 470
0
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2
replies
2.7k
views
Problem with Proteinortho.pl
blast software error homologs orthologs
updated 5.9 years ago by • 0 • written 7.8 years ago by ▴ 470
1
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0
replies
1.5k
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Comment: C: Genome Annotation of a new bacterial strain
6.4 years ago by JV ▴ 470
1
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0
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5.0k
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Comment: C: Low percentage of Illumina reads retained after trimming with Trimmomatic
6.4 years ago by JV ▴ 470
0
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0
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4.4k
views
Comment: Comment: Orthology detection using proteinortho
updated 3.1 years ago by 45k • written 7.8 years ago by ▴ 470
5
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1
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4.9k
views
Answer: A: Merging of contigs files by minimus2
7.9 years ago by JV ▴ 470
1
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0
replies
20k
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Comment: C: retrieving best hit in local blast output
8.0 years ago by JV ▴ 470
2
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1
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20k
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Answer: A: retrieving best hit in local blast output
8.0 years ago by JV ▴ 470
2
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0
replies
6.2k
views
Answer: A: How to update Biopyhton?
8.2 years ago by JV ▴ 470
1
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0
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6.2k
views
Comment: C: How to update Biopyhton?
8.2 years ago by JV ▴ 470
10
votes
7
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6.2k
views
How to update Biopyhton?
biopython python linux pip
8.2 years ago by JV ▴ 470
1
vote
0
replies
6.2k
views
Comment: C: How to update Biopyhton?
8.2 years ago by JV ▴ 470
1
vote
2
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6.2k
views
Comment: C: How to update Biopyhton?
8.2 years ago by JV ▴ 470
4
votes
6
replies
4.8k
views
Installation issues with hmmer2
hmmer hmmer2 hmmsearch prokka
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
1
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1
reply
6.3k
views
How to get correct Taxonomy UID from NCBI Taxonomy using Entrez E-utilities efetch?
efetch ncbi biopython Entrez E-utilities
updated 8.7 years ago by ★ 1.9k • written 8.7 years ago by ▴ 470
0
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0
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3.7k
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Comment: C: specifying "GI mapping files" for MEGAN5 on command line interface
8.8 years ago by JV ▴ 470
1
vote
2
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7.1k
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Comment: C: Bowtie2 End-to-End or Local alignment mode, Which one i should choose for downst
8.8 years ago by JV ▴ 470
2
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0
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4.8k
views
Answer: A: How to use scripts with MEGAN5 in commandLineMode
8.9 years ago by JV ▴ 470
3
votes
3
replies
4.8k
views
How to use scripts with MEGAN5 in commandLineMode
Megan Megan5 Metagenomics
8.9 years ago by JV ▴ 470
0
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0
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4.8k
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Comment: C: How to use scripts with MEGAN5 in commandLineMode
8.9 years ago by JV ▴ 470
3
votes
3
replies
3.7k
views
specifying "GI mapping files" for MEGAN5 on command line interface
command-line metagenomics MEGAN taxonomy
updated 2.6 years ago by 45k • written 9.5 years ago by ▴ 470
3
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1
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5.5k
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Answer: Answer: MEGAN5 help - no assigned reads
updated 2.3 years ago by 45k • written 9.8 years ago by ▴ 470
0
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0
replies
3.6k
views
bowtie2 output all aligned reads from paired alignment (even unconcordant pairs or single reads)
Assembly bowtie2 SAM alignment BAM
updated 2.2 years ago by 45k • written 9.9 years ago by ▴ 470
16
votes
26
replies
23k
views
Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
ftp wget sequence NCBI genbank
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
2
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0
replies
11k
views
Answer: Answer: BLAST: Is there a difference between splitting queries and using more threads?
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 470
0
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1
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11k
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Comment: C: BLAST: Is there a difference between splitting queries and using more threads?
10.4 years ago by JV ▴ 470
17
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15
replies
11k
views
BLAST: Is there a difference between splitting queries and using more threads?
BLAST threads split-queries
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 470
0
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0
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11k
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Comment: C: BLAST: Is there a difference between splitting queries and using more threads?
10.4 years ago by JV ▴ 470
0
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0
replies
11k
views
Comment: C: BLAST: Is there a difference between splitting queries and using more threads?
10.4 years ago by JV ▴ 470
0
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0
replies
11k
views
Comment: C: BLAST: Is there a difference between splitting queries and using more threads?
10.4 years ago by JV ▴ 470
2
votes
2
replies
11k
views
Answer: Answer: BLAST: Is there a difference between splitting queries and using more threads?
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 470
4
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0
replies
14k
views
Comment: C: Run Makeblastdb For Compressed File
10.4 years ago by JV ▴ 470
0
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2
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23k
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Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
10.5 years ago by JV ▴ 470
0
votes
1
reply
23k
views
Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
0
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0
replies
23k
views
Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
0
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1
reply
23k
views
Comment: C: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
10.5 years ago by JV ▴ 470
1
vote
1
reply
23k
views
Answer: Answer: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
0
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0
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23k
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Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
1
vote
0
replies
23k
views
Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
1
vote
1
reply
23k
views
Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
1
vote
1
reply
23k
views
Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
1
vote
1
reply
23k
views
Comment: Comment: Downloading multiple species from ftp.ncbi.nih.gov using wget and wildcards
updated 3.2 years ago by 45k • written 10.5 years ago by ▴ 470
1
vote
1
reply
4.8k
views
Comment: C: Installation issues with hmmer2
10.5 years ago by JV ▴ 470
0
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0
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4.8k
views
Comment: C: Installation issues with hmmer2
10.5 years ago by JV ▴ 470
0
votes
1
reply
4.8k
views
Answer: A: Installation issues with hmmer2
10.5 years ago by JV ▴ 470
2
votes
1
reply
5.1k
views
assembly paired-end + single-reads together with idba_ud ?
metagenomics IDBA-UD next-gen Assembly
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 470
3
votes
1
reply
3.3k
views
Metavelvet issues. meta-velvetg.Graph2-stats.txt missing? Assembly not reproducable?
meta-velvet velvet metagenome Assembly
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 470
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