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301
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Comment: Comment: Best way to install R packages on an HPC?
1 day ago by QX ▴ 70
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220
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Answer: Answer: ATAC seq: from peaks to differential analysis ??
2 days ago by QX ▴ 70
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1
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304
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checking the sequences that share origin
sequencing
updated 6 days ago by 152k • written 6 days ago by ▴ 70
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2
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489
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Alignment algorithm for DNA sequencing
sequencing data DNA
updated 3 months ago by 88k • written 3 months ago by ▴ 70
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0
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768
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Comment: Comment: Is there a proper way to choose bins in barplot
5 months ago by QX ▴ 70
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1
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768
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Comment: Comment: Is there a proper way to choose bins in barplot
5 months ago by QX ▴ 70
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0
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768
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Comment: Comment: Is there a proper way to choose bins in barplot
5 months ago by QX ▴ 70
3
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6
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768
views
Is there a proper way to choose bins in barplot
visualization plot bar
5 months ago by QX ▴ 70
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0
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766
views
Answer: Answer: CNV Analysis and Visualisation
5 months ago by QX ▴ 70
2
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2
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464
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statistical testing for MS/MS proteomics bulk samples
DEG proteomics
updated 7 months ago by 88k • written 7 months ago by ▴ 70
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1.6k
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Comment: Comment: Gatk haplotyper
7 months ago by QX ▴ 70
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1
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853
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Comment: Comment: coordinate vs contributions for the variables in PCA using FactoMineR
7 months ago by QX ▴ 70
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0
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853
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Comment: Comment: coordinate vs contributions for the variables in PCA using FactoMineR
7 months ago by QX ▴ 70
2
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4
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853
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coordinate vs contributions for the variables in PCA using FactoMineR
PCA
updated 7 months ago by 6.4k • written 7 months ago by ▴ 70
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0
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1.2k
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Comment: Comment: PCA for count data
8 months ago by QX ▴ 70
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0
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1.2k
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Comment: Comment: PCA for count data
8 months ago by QX ▴ 70
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1
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1.2k
views
Comment: Comment: PCA for count data
8 months ago by QX ▴ 70
3
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6
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1.2k
views
PCA for count data
PCA
8 months ago by QX ▴ 70
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0
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845
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Comment: Comment: DEseq2 with different designs matrix
9 months ago by QX ▴ 70
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3
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845
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DEseq2 with different designs matrix
DEseq2
9 months ago by QX ▴ 70
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0
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301
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Different position for same gene using annotatePeak from ChIPseeker
ChIPseeker ATACseq
9 months ago by QX ▴ 70
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0
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293
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plotHeatmap from deeptools explain
atac-seq
9 months ago by QX ▴ 70
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0
replies
1.7k
views
Comment: Comment: difference between macs2 callpeak using bam and bed file
10 months ago by QX ▴ 70
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1
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1.7k
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Comment: Comment: difference between macs2 callpeak using bam and bed file
10 months ago by QX ▴ 70
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4
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1.7k
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difference between macs2 callpeak using bam and bed file
macs2 atac-seq
10 months ago by QX ▴ 70
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0
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829
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
10 months ago by QX ▴ 70
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0
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3.9k
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Comment: Comment: ATAC-seq peak calling
10 months ago by QX ▴ 70
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1
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1.0k
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Comment: Comment: call peak for all replicates in all conditions using macs2
10 months ago by QX ▴ 70
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0
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1.0k
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Comment: Comment: call peak for all replicates in all conditions using macs2
10 months ago by QX ▴ 70
0
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1
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829
views
Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
10 months ago by QX ▴ 70
2
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5
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1.0k
views
call peak for all replicates in all conditions using macs2
macs2 ATACseq
updated 10 months ago by ▴ 150 • written 10 months ago by ▴ 70
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0
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2.5k
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Comment: Comment: How get density plot TSS region for genes of interest
10 months ago by QX ▴ 70
1
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4
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829
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trimming 151bp to shorter k-mer in ATAC-seq analysis
ATAC-seq
10 months ago by QX ▴ 70
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0
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11k
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Comment: Comment: Using featureCounts and DESeq2 to look at differences between ATAC-seq condition
10 months ago by QX ▴ 70
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1
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2.5k
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Comment: Comment: How get density plot TSS region for genes of interest
10 months ago by QX ▴ 70
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1
reply
1.6k
views
Comment: Comment: which bed file should be used for deeptools computeMatrix
10 months ago by QX ▴ 70
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1
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1.6k
views
Comment: Comment: which bed file should be used for deeptools computeMatrix
10 months ago by QX ▴ 70
3
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6
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1.6k
views
which bed file should be used for deeptools computeMatrix
atac-seq deeptools
updated 10 months ago by ★ 4.7k • written 10 months ago by ▴ 70
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0
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2.4k
views
Comment: Comment: Plotting chip signal at TSSs with deeptools
10 months ago by QX ▴ 70
0
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0
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378
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reference-point setting from computeMatrix
ATACseq
10 months ago by QX ▴ 70
0
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0
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311
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which distance used for kmeans in deeptools plotHeatmap
atac deeptools
10 months ago by QX ▴ 70
1
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1
reply
626
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merge replicate for bigWig files from macs2 peak calling
ATAC-seq
updated 10 months ago by 88k • written 10 months ago by ▴ 70
0
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0
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912
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
10 months ago by QX ▴ 70
0
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1
reply
912
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
10 months ago by QX ▴ 70
0
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0
replies
7.1k
views
Comment: Comment: How to create SAF from text file for FeatureCounts
10 months ago by QX ▴ 70
0
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1
reply
1.3k
views
Comment: Comment: featureCounts output
10 months ago by QX ▴ 70
4
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4
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912
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MACS2 for multiple conditions in ATACseq analysis
mac2
10 months ago by QX ▴ 70
4
votes
4
replies
1.0k
views
Increase the memory and core usage of R
R
updated 10 months ago by ★ 29k • written 10 months ago by ▴ 70
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0
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817
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Comment: Comment: is that statistical correct to use DEseq2 for proteomics data
10 months ago by QX ▴ 70
3
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2
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817
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is that statistical correct to use DEseq2 for proteomics data
proteomics DEseq2
updated 10 months ago by 88k • written 10 months ago by ▴ 70
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