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413
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Comment: Comment: DEseq2 with different designs matrix
13 days ago by QX ▴ 60
0
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3
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413
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DEseq2 with different designs matrix
DEseq2
13 days ago by QX ▴ 60
0
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0
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124
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Different position for same gene using annotatePeak from ChIPseeker
ChIPseeker ATACseq
19 days ago by QX ▴ 60
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0
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133
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plotHeatmap from deeptools explain
atac-seq
19 days ago by QX ▴ 60
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0
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423
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Comment: Comment: difference between macs2 callpeak using bam and bed file
28 days ago by QX ▴ 60
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1
reply
423
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Comment: Comment: difference between macs2 callpeak using bam and bed file
28 days ago by QX ▴ 60
5
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4
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423
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difference between macs2 callpeak using bam and bed file
macs2 atac-seq
28 days ago by QX ▴ 60
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0
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347
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Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
4 weeks ago by QX ▴ 60
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0
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3.1k
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Comment: Comment: ATAC-seq peak calling
4 weeks ago by QX ▴ 60
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1
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406
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Comment: Comment: call peak for all replicates in all conditions using macs2
4 weeks ago by QX ▴ 60
0
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0
replies
406
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Comment: Comment: call peak for all replicates in all conditions using macs2
4 weeks ago by QX ▴ 60
0
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1
reply
347
views
Comment: Comment: trimming 151bp to shorter k-mer in ATAC-seq analysis
4 weeks ago by QX ▴ 60
2
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5
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406
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call peak for all replicates in all conditions using macs2
macs2 ATACseq
updated 4 weeks ago by ▴ 150 • written 4 weeks ago by ▴ 60
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0
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2.0k
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Comment: Comment: How get density plot TSS region for genes of interest
4 weeks ago by QX ▴ 60
1
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4
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347
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trimming 151bp to shorter k-mer in ATAC-seq analysis
ATAC-seq
4 weeks ago by QX ▴ 60
0
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0
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9.1k
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Comment: Comment: Using featureCounts and DESeq2 to look at differences between ATAC-seq condition
4 weeks ago by QX ▴ 60
0
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1
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2.0k
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Comment: Comment: How get density plot TSS region for genes of interest
4 weeks ago by QX ▴ 60
0
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1
reply
525
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Comment: Comment: which bed file should be used for deeptools computeMatrix
5 weeks ago by QX ▴ 60
0
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1
reply
525
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Comment: Comment: which bed file should be used for deeptools computeMatrix
5 weeks ago by QX ▴ 60
3
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6
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525
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which bed file should be used for deeptools computeMatrix
atac-seq deeptools
updated 5 weeks ago by ★ 4.3k • written 5 weeks ago by ▴ 60
0
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0
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2.0k
views
Comment: Comment: Plotting chip signal at TSSs with deeptools
5 weeks ago by QX ▴ 60
0
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0
replies
158
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reference-point setting from computeMatrix
ATACseq
5 weeks ago by QX ▴ 60
0
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0
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125
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which distance used for kmeans in deeptools plotHeatmap
atac deeptools
5 weeks ago by QX ▴ 60
1
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1
reply
208
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merge replicate for bigWig files from macs2 peak calling
ATAC-seq
updated 5 weeks ago by 84k • written 5 weeks ago by ▴ 60
0
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0
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289
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
7 weeks ago by QX ▴ 60
0
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1
reply
289
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Comment: Comment: MACS2 for multiple conditions in ATACseq analysis
7 weeks ago by QX ▴ 60
0
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0
replies
5.8k
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Comment: Comment: How to create SAF from text file for FeatureCounts
7 weeks ago by QX ▴ 60
0
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1
reply
499
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
4
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4
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289
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MACS2 for multiple conditions in ATACseq analysis
mac2
7 weeks ago by QX ▴ 60
4
votes
4
replies
511
views
Increase the memory and core usage of R
R
updated 7 weeks ago by ★ 28k • written 7 weeks ago by ▴ 60
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0
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367
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Comment: Comment: is that statistical correct to use DEseq2 for proteomics data
7 weeks ago by QX ▴ 60
3
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2
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367
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is that statistical correct to use DEseq2 for proteomics data
proteomics DEseq2
updated 7 weeks ago by 84k • written 7 weeks ago by ▴ 60
0
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0
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511
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Comment: Comment: Increase the memory and core usage of R
7 weeks ago by QX ▴ 60
1
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0
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499
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
4
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8
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499
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featureCounts output
macs2 featureCounts
updated 7 weeks ago by ★ 1.3k • written 7 weeks ago by ▴ 60
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0
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499
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
0
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0
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499
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Comment: Comment: featureCounts output
7 weeks ago by QX ▴ 60
0
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1
reply
440
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
0
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0
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440
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
0
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1
reply
440
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Comment: Comment: input for gatk VariantAnnotator --dbsnp
8 weeks ago by QX ▴ 60
2
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6
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440
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input for gatk VariantAnnotator --dbsnp
VariantAnnotator gatk
updated 8 weeks ago by 145k • written 8 weeks ago by ▴ 60
0
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0
replies
441
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Comment: Comment: best way to submit hpc job using snakemake
9 weeks ago by QX ▴ 60
0
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1
reply
441
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Comment: Comment: best way to submit hpc job using snakemake
9 weeks ago by QX ▴ 60
5
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5
replies
441
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best way to submit hpc job using snakemake
snakemake
9 weeks ago by QX ▴ 60
0
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1
reply
291
views
Comment: Comment: snakemake config file with path
10 weeks ago by QX ▴ 60
1
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3
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291
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snakemake config file with path
snakemake
updated 10 weeks ago by ▴ 140 • written 10 weeks ago by ▴ 60
0
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2
replies
290
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how to colorize snakemake editing text
snakemake
updated 10 weeks ago by 55k • written 10 weeks ago by ▴ 60
1
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1
reply
346
views
Comment: Comment: Any recommended way to view scRNAseq results in an interactive format?
10 weeks ago by QX ▴ 60
0
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0
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529
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Comment: Comment: Calling variants/SNP for single-cell RNA-seq data
11 weeks ago by QX ▴ 60
3
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5
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529
views
Calling variants/SNP for single-cell RNA-seq data
SNP scRNAseq
updated 20 days ago by ▴ 420 • written 11 weeks ago by ▴ 60
107 results • Page 1 of 3
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