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2
votes
1
reply
289
views
Split the fastqc file base on barcode
fastq
updated 12 weeks ago by 145k • written 12 weeks ago by ▴ 60
0
votes
0
replies
379
views
Comment: Comment: bash for merging bam files by samtools
12 weeks ago by QX ▴ 60
0
votes
0
replies
422
views
Comment: Comment: scRNA integration problem with cluster not being separated
12 weeks ago by QX ▴ 60
2
votes
3
replies
378
views
bash for merging bam files by samtools
samtools
updated 12 weeks ago by 145k • written 12 weeks ago by ▴ 60
0
votes
0
replies
483
views
Comment: Comment: chIP-seq vs ATACseq analysis
12 weeks ago by QX ▴ 60
5
votes
3
replies
483
views
chIP-seq vs ATACseq analysis
ATACseq
12 weeks ago by QX ▴ 60
0
votes
1
reply
327
views
invalid class “Assay” object issue from Seurat
seurat
updated 3 months ago by ★ 2.9k • written 3 months ago by ▴ 60
0
votes
1
reply
422
views
Comment: Comment: scRNA integration problem with cluster not being separated
3 months ago by QX ▴ 60
8
votes
3
replies
449
views
conda-like env for R
R conda
updated 12 weeks ago by ★ 2.4k • written 3 months ago by ▴ 60
0
votes
0
replies
5.4k
views
Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
3 months ago by QX ▴ 60
0
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1
reply
5.4k
views
Comment: Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
3 months ago by QX ▴ 60
2
votes
1
reply
236
views
Trimming from 151bp to 65bp
sequencing data
updated 3 months ago by 145k • written 3 months ago by ▴ 60
0
votes
0
replies
620
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
0
votes
1
reply
620
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
0
votes
0
replies
620
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
0
votes
2
replies
620
views
Comment: Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
3 months ago by QX ▴ 60
5
votes
11
replies
620
views
6 follow
Asking for parallel jobs setting on HPC when analyzing sequencing data
HPC parallel
updated 3 months ago by 4.6k • written 3 months ago by ▴ 60
0
votes
1
reply
7.0k
views
Comment: Comment: Difference between proper paired reads and mapped and paired reads
3 months ago by QX ▴ 60
0
votes
0
replies
357
views
Comment: Comment: cannot conda install macs3 on linux
3 months ago by QX ▴ 60
4
votes
2
replies
357
views
cannot conda install macs3 on linux
atac macs3
3 months ago by QX ▴ 60
0
votes
1
reply
614
views
Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
3 months ago by QX ▴ 60
3
votes
5
replies
614
views
How to scrape BioMart data from https://sorfs.ugent.be/ website
BioMart
updated 3 months ago by 163k • written 3 months ago by ▴ 60
0
votes
0
replies
614
views
Comment: Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
3 months ago by QX ▴ 60
0
votes
0
replies
417
views
Comment: Comment: Unexpected read length from NGS
3 months ago by QX ▴ 60
3
votes
3
replies
417
views
Unexpected read length from NGS
NGS Illumina
3 months ago by QX ▴ 60
0
votes
0
replies
594
views
Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
4 months ago by QX ▴ 60
0
votes
1
reply
594
views
Comment: Comment: Why gatk VariantAnnotator required bam and coverage files
4 months ago by QX ▴ 60
3
votes
4
replies
594
views
Why gatk VariantAnnotator required bam and coverage files
gatk VariantAnnotator
4 months ago by QX ▴ 60
0
votes
0
replies
177
views
Add geno header to VariantAnnotation objects
nichenet scRNA-seq
4 months ago by QX ▴ 60
0
votes
0
replies
370
views
Comment: Comment: Cell communacations analysis. I only have the proteome of one type of cell
5 months ago by QX ▴ 60
0
votes
0
replies
154
views
NicheNet cell-cell communication analysis outcome
nichenet scRNA-seq
5 months ago by QX ▴ 60
0
votes
0
replies
528
views
Comment: Comment: Annotate genes from gtf file to vcf file
5 months ago by QX ▴ 60
2
votes
3
replies
528
views
Annotate genes from gtf file to vcf file
gtf genomics vcf
5 months ago by QX ▴ 60
0
votes
0
replies
1.9k
views
Comment: Comment: Adding gene symbol to GRanges for calculation purposes
5 months ago by QX ▴ 60
0
votes
1
reply
283
views
Adding gene to GRange objects with single base
GRanges genomics
updated 5 months ago by 84k • written 5 months ago by ▴ 60
0
votes
1
reply
266
views
SNP and Genes position matching dataframes in R
R dataframe
updated 5 months ago by ★ 2.4k • written 5 months ago by ▴ 60
2
votes
1
reply
253
views
Computing the neighborhood graph in single cell pipeline
single-cell knn
updated 6 months ago by 84k • written 6 months ago by ▴ 60
0
votes
2
replies
400
views
Visualize and access gvcf/vcf files
genomics vcf
updated 8 weeks ago by ▴ 10 • written 6 months ago by ▴ 60
0
votes
0
replies
768
views
Comment: Comment: batch effect correction in 10x genomics single cell sequencing
7 months ago by QX ▴ 60
0
votes
3
replies
768
views
Comment: Comment: batch effect correction in 10x genomics single cell sequencing
7 months ago by QX ▴ 60
0
votes
0
replies
862
views
Comment: Comment: problem with importing mtx file in scanpy
8 months ago by QX ▴ 60
0
votes
2
replies
862
views
problem with importing mtx file in scanpy
scanpy scRNAseq
8 months ago by QX ▴ 60
0
votes
0
replies
1.0k
views
Answer: Answer: How can I call somatic CNV in tumor samples with no normal samples?
8 months ago by QX ▴ 60
1
vote
1
reply
441
views
Variant calling using HaplotypeCaller does not show #FILTER information
Variant-calling GATK HaplotypeCaller WGS
updated 8 months ago by 44k • written 8 months ago by ▴ 60
0
votes
0
replies
528
views
Comment: Comment: Execute R command on specific termimal
9 months ago by QX ▴ 60
5
votes
2
replies
528
views
Execute R command on specific termimal
R
updated 9 months ago by 44k • written 9 months ago by ▴ 60
0
votes
0
replies
1.0k
views
Comment: Comment: Downstream analysis with DEseq2 normalization
9 months ago by QX ▴ 60
0
votes
1
reply
1.0k
views
Comment: Comment: Downstream analysis with DEseq2 normalization
9 months ago by QX ▴ 60
0
votes
0
replies
585
views
Comment: Comment: Normalization function in DEseq2
9 months ago by QX ▴ 60
3
votes
4
replies
1.0k
views
Downstream analysis with DEseq2 normalization
DEseq2 integration
9 months ago by QX ▴ 60
107 results • Page 2 of 3
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