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559
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Comment:
Comment: best way to submit hpc job using snakemake
4 months ago by
QX
▴ 60
0
votes
1
reply
559
views
Comment:
Comment: best way to submit hpc job using snakemake
4 months ago by
QX
▴ 60
5
votes
5
replies
559
views
best way to submit hpc job using snakemake
snakemake
4 months ago by
QX
▴ 60
0
votes
1
reply
342
views
Comment:
Comment: snakemake config file with path
4 months ago by
QX
▴ 60
1
vote
3
replies
342
views
snakemake config file with path
snakemake
updated 4 months ago by
pbioinf
▴ 140 • written 4 months ago by
QX
▴ 60
0
votes
2
replies
334
views
how to colorize snakemake editing text
snakemake
updated 4 months ago by
Michael
55k • written 4 months ago by
QX
▴ 60
1
vote
1
reply
392
views
Comment:
Comment: Any recommended way to view scRNAseq results in an interactive format?
4 months ago by
QX
▴ 60
0
votes
0
replies
686
views
Comment:
Comment: Calling variants/SNP for single-cell RNA-seq data
5 months ago by
QX
▴ 60
3
votes
5
replies
686
views
Calling variants/SNP for single-cell RNA-seq data
SNP
scRNAseq
updated 12 weeks ago by
yura.grabovska
▴ 660 • written 5 months ago by
QX
▴ 60
2
votes
1
reply
322
views
Split the fastqc file base on barcode
fastq
updated 5 months ago by
GenoMax
147k • written 5 months ago by
QX
▴ 60
0
votes
0
replies
458
views
Comment:
Comment: bash for merging bam files by samtools
5 months ago by
QX
▴ 60
0
votes
0
replies
477
views
Comment:
Comment: scRNA integration problem with cluster not being separated
5 months ago by
QX
▴ 60
2
votes
3
replies
458
views
bash for merging bam files by samtools
samtools
updated 5 months ago by
GenoMax
147k • written 5 months ago by
QX
▴ 60
0
votes
0
replies
590
views
Comment:
Comment: chIP-seq vs ATACseq analysis
5 months ago by
QX
▴ 60
5
votes
3
replies
590
views
chIP-seq vs ATACseq analysis
ATACseq
5 months ago by
QX
▴ 60
0
votes
1
reply
451
views
invalid class “Assay” object issue from Seurat
seurat
updated 5 months ago by
bk11
★ 3.0k • written 5 months ago by
QX
▴ 60
0
votes
1
reply
477
views
Comment:
Comment: scRNA integration problem with cluster not being separated
5 months ago by
QX
▴ 60
8
votes
3
replies
548
views
conda-like env for R
R
conda
updated 5 months ago by
dthorbur
★ 2.5k • written 5 months ago by
QX
▴ 60
0
votes
0
replies
5.6k
views
Comment:
Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
5 months ago by
QX
▴ 60
0
votes
1
reply
5.6k
views
Comment:
Comment: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
5 months ago by
QX
▴ 60
2
votes
1
reply
309
views
Trimming from 151bp to 65bp
sequencing
data
updated 5 months ago by
GenoMax
147k • written 5 months ago by
QX
▴ 60
0
votes
0
replies
731
views
Comment:
Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
5 months ago by
QX
▴ 60
0
votes
1
reply
731
views
Comment:
Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
5 months ago by
QX
▴ 60
0
votes
0
replies
731
views
Comment:
Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
5 months ago by
QX
▴ 60
0
votes
2
replies
731
views
Comment:
Comment: Asking for parallel jobs setting on HPC when analyzing sequencing data
5 months ago by
QX
▴ 60
5
votes
11
replies
731
views
6 follow
Asking for parallel jobs setting on HPC when analyzing sequencing data
HPC
parallel
updated 5 months ago by
Darked89
4.7k • written 5 months ago by
QX
▴ 60
0
votes
1
reply
7.2k
views
Comment:
Comment: Difference between proper paired reads and mapped and paired reads
5 months ago by
QX
▴ 60
0
votes
0
replies
482
views
Comment:
Comment: cannot conda install macs3 on linux
5 months ago by
QX
▴ 60
4
votes
2
replies
482
views
cannot conda install macs3 on linux
atac
macs3
5 months ago by
QX
▴ 60
0
votes
1
reply
709
views
Comment:
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
6 months ago by
QX
▴ 60
3
votes
5
replies
709
views
How to scrape BioMart data from https://sorfs.ugent.be/ website
BioMart
updated 6 months ago by
Pierre Lindenbaum
164k • written 6 months ago by
QX
▴ 60
0
votes
0
replies
709
views
Comment:
Comment: How to scrape BioMart data from https://sorfs.ugent.be/ website
6 months ago by
QX
▴ 60
0
votes
0
replies
502
views
Comment:
Comment: Unexpected read length from NGS
6 months ago by
QX
▴ 60
3
votes
3
replies
502
views
Unexpected read length from NGS
NGS
Illumina
6 months ago by
QX
▴ 60
0
votes
0
replies
671
views
Comment:
Comment: Why gatk VariantAnnotator required bam and coverage files
7 months ago by
QX
▴ 60
0
votes
1
reply
671
views
Comment:
Comment: Why gatk VariantAnnotator required bam and coverage files
7 months ago by
QX
▴ 60
3
votes
4
replies
671
views
Why gatk VariantAnnotator required bam and coverage files
gatk
VariantAnnotator
7 months ago by
QX
▴ 60
0
votes
0
replies
194
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
7 months ago by
QX
▴ 60
0
votes
0
replies
404
views
Comment:
Comment: Cell communacations analysis. I only have the proteome of one type of cell
7 months ago by
QX
▴ 60
0
votes
0
replies
179
views
NicheNet cell-cell communication analysis outcome
nichenet
scRNA-seq
7 months ago by
QX
▴ 60
0
votes
0
replies
638
views
Comment:
Comment: Annotate genes from gtf file to vcf file
8 months ago by
QX
▴ 60
2
votes
3
replies
638
views
Annotate genes from gtf file to vcf file
gtf
genomics
vcf
8 months ago by
QX
▴ 60
0
votes
0
replies
2.0k
views
Comment:
Comment: Adding gene symbol to GRanges for calculation purposes
8 months ago by
QX
▴ 60
0
votes
1
reply
319
views
Adding gene to GRange objects with single base
GRanges
genomics
updated 8 months ago by
ATpoint
85k • written 8 months ago by
QX
▴ 60
0
votes
1
reply
298
views
SNP and Genes position matching dataframes in R
R
dataframe
updated 8 months ago by
dthorbur
★ 2.5k • written 8 months ago by
QX
▴ 60
2
votes
1
reply
283
views
Computing the neighborhood graph in single cell pipeline
single-cell
knn
updated 8 months ago by
ATpoint
85k • written 8 months ago by
QX
▴ 60
0
votes
2
replies
469
views
Visualize and access gvcf/vcf files
genomics
vcf
updated 4 months ago by
venkat
▴ 10 • written 9 months ago by
QX
▴ 60
0
votes
0
replies
884
views
Comment:
Comment: batch effect correction in 10x genomics single cell sequencing
10 months ago by
QX
▴ 60
0
votes
3
replies
884
views
Comment:
Comment: batch effect correction in 10x genomics single cell sequencing
10 months ago by
QX
▴ 60
0
votes
0
replies
1.0k
views
Comment:
Comment: problem with importing mtx file in scanpy
10 months ago by
QX
▴ 60
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