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Comment: C: extracting info field from VCF using vcfr
5.1 years ago by Brice Sarver ★ 3.8k
1
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0
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1.8k
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Comment: C: Need help with codeml
5.1 years ago by Brice Sarver ★ 3.8k
2
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0
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12k
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Answer: A: padj in DEseq2
5.1 years ago by Brice Sarver ★ 3.8k
1
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1
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2.1k
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Comment: C: How to make a phylogenetic tree set in ASTRAL?
5.1 years ago by Brice Sarver ★ 3.8k
3
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1
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1.8k
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Answer: A: Need help with codeml
5.1 years ago by Brice Sarver ★ 3.8k
0
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0
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1.2k
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Comment: C: coverage of narrow peaks on genomic region using bedtools
5.1 years ago by Brice Sarver ★ 3.8k
1
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1
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1.2k
views
Answer: A: coverage of narrow peaks on genomic region using bedtools
5.1 years ago by Brice Sarver ★ 3.8k
0
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0
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834
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Comment: C: Meaning of minus ("-") sign in frameshift protein variant nomenclature
5.1 years ago by Brice Sarver ★ 3.8k
3
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1
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6.0k
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Answer: A: Remove or mask repeat regions from .fasta file
updated 5.1 years ago by 44k • written 9.5 years ago by ★ 3.8k
3
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0
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1.0k
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Answer: A: Do you recommend any platform that I can use instead of an HPC?
5.1 years ago by Brice Sarver ★ 3.8k
0
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0
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1.9k
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Comment: C: Are reads with the same length and position always "duplicates"
5.1 years ago by Brice Sarver ★ 3.8k
1
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1
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1.9k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.1 years ago by Brice Sarver ★ 3.8k
2
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2
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1.9k
views
Answer: A: Are reads with the same length and position always "duplicates"
5.1 years ago by Brice Sarver ★ 3.8k
3
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1
reply
1.3k
views
Answer: A: generating 'maximal' cds sequence from multiple isoforms of a gene
5.1 years ago by Brice Sarver ★ 3.8k
1
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0
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1.9k
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Comment: C: Annotating dbnsfp by SnpSift on a cluster
5.1 years ago by Brice Sarver ★ 3.8k
0
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1
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1.5k
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Comment: C: How to count the length of a fasta sequence and number of occurrence of a partic
5.1 years ago by Brice Sarver ★ 3.8k
3
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0
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2.1k
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Answer: Answer: split supermatrix by gene
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 3.8k
1
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1
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1.9k
views
Answer: A: Annotating dbnsfp by SnpSift on a cluster
5.1 years ago by Brice Sarver ★ 3.8k
0
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1
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1.9k
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Comment: C: Annotating dbnsfp by SnpSift on a cluster
5.1 years ago by Brice Sarver ★ 3.8k
5
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0
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1.1k
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Answer: A: Purpose of concatenation
5.2 years ago by Brice Sarver ★ 3.8k
1
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0
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1.9k
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Comment: C: How to interpret a phylogenetic tree
5.2 years ago by Brice Sarver ★ 3.8k
0
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1
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5.1k
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Comment: C: Help needed with Biopython and Spyder
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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1.2k
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Comment: C: bcftools -trim-alt-alleles errors
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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1.2k
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Answer: A: Determine level of heterozygosity
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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15k
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Comment: C: samtools index error
5.2 years ago by Brice Sarver ★ 3.8k
0
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1
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15k
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Comment: C: samtools index error
5.2 years ago by Brice Sarver ★ 3.8k
0
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1
reply
15k
views
Comment: C: samtools index error
5.2 years ago by Brice Sarver ★ 3.8k
1
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1
reply
15k
views
Answer: A: samtools index error
5.2 years ago by Brice Sarver ★ 3.8k
0
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1
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1.2k
views
Answer: A: Combine several VCF files
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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1.6k
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Comment: C: Multiple test correction in Hyphy Analysis ?
5.2 years ago by Brice Sarver ★ 3.8k
4
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1
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1.6k
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Answer: A: Multiple test correction in Hyphy Analysis ?
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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1.4k
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Answer: A: How to download large amount of data from NCBI?
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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3.1k
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Answer: A: Import VCF from GnomAD
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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1.3k
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Comment: C: Population Genetics from SNP data- no VCF
5.2 years ago by Brice Sarver ★ 3.8k
2
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1
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1.9k
views
Answer: A: Building gene trees
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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735
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Answer: A: identify disease related variants with RNA-seq
5.2 years ago by Brice Sarver ★ 3.8k
1
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0
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748
views
Answer: A: Pipeline for familial sequencing
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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722
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Comment: C: Advice for an Internship in France/Switzerland
5.2 years ago by Brice Sarver ★ 3.8k
0
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1
reply
1.6k
views
Comment: C: Issue with phytools phyl.pca and scores() feature
5.2 years ago by Brice Sarver ★ 3.8k
2
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0
replies
2.7k
views
Answer: A: Drop tip from multiPhylo object in R
5.2 years ago by Brice Sarver ★ 3.8k
0
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0
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917
views
Comment: C: Best practices for analysing protein (amino acid) sequences?
5.3 years ago by Brice Sarver ★ 3.8k
0
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1
reply
1.6k
views
Comment: C: how do I default to /dev/null in CommandLineTool
5.3 years ago by Brice Sarver ★ 3.8k
1
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0
replies
3.9k
views
Answer: A: CrossMap VCF liftover (GRCh37 > GRCh38): END info field for indel calls not lift
5.3 years ago by Brice Sarver ★ 3.8k
0
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0
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3.9k
views
Comment: C: CrossMap VCF liftover (GRCh37 > GRCh38): END info field for indel calls not lift
5.3 years ago by Brice Sarver ★ 3.8k
1
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0
replies
27k
views
Comment: C: ModuleNotFoundError: No module named 'Bio'
5.3 years ago by Brice Sarver ★ 3.8k
0
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0
replies
1.2k
views
Answer: A: Bootstrap values in Gubbins final tree
5.3 years ago by Brice Sarver ★ 3.8k
1
vote
1
reply
3.9k
views
Comment: C: CrossMap VCF liftover (GRCh37 > GRCh38): END info field for indel calls not lift
5.3 years ago by Brice Sarver ★ 3.8k
1
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2
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27k
views
Answer: A: ModuleNotFoundError: No module named 'Bio'
5.3 years ago by Brice Sarver ★ 3.8k
0
votes
1
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3.9k
views
Comment: C: CrossMap VCF liftover (GRCh37 > GRCh38): END info field for indel calls not lift
5.3 years ago by Brice Sarver ★ 3.8k
1
vote
0
replies
975
views
Answer: A: Seeking Tutorial on codon subsitution model and how we can develop more robust
5.3 years ago by Brice Sarver ★ 3.8k
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