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Comment: Comment: wrapping htslib and parsing CRAM files
5 months ago by chrisclarkson100 ▴ 160
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2
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373
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wrapping htslib and parsing CRAM files
Expansionhunterdenovo htslib CRAM
5 months ago by chrisclarkson100 ▴ 160
1
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1
reply
684
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background nucleotide probability when finding TF binding sites in GRCh38
binding transcription factor
updated 2.6 years ago by 5.1k • written 2.6 years ago by ▴ 160
8
votes
5
replies
2.6k
views
finding compatible version of reference genome for use of GATK
bowtie2 GATK
updated 3.3 years ago by ▴ 230 • written 3.3 years ago by ▴ 160
2
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0
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2.6k
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Answer: Answer: finding compatible version of reference genome for use of GATK
3.3 years ago by chrisclarkson100 ▴ 160
0
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0
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586
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Best software for hQTL analysis with the aim of performing MR analysis
MendelianRandomisation hQTL
3.4 years ago by chrisclarkson100 ▴ 160
0
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1
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2.2k
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Comment: Comment: formatting error: Calculate LD matrix from bgen file
3.7 years ago by chrisclarkson100 ▴ 160
1
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3
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2.2k
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formatting error: Calculate LD matrix from bgen file
plink ld_matrix
updated 10 months ago by 45k • written 3.7 years ago by ▴ 160
1
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0
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5.7k
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Answer: A: Error when using Bedtools fisher on sorted bed files
4.3 years ago by chrisclarkson100 ▴ 160
1
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1
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1.5k
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Answer: A: tabix indexing a GTEx variant file- ':' delimited
4.6 years ago by chrisclarkson100 ▴ 160
1
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4
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1.5k
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tabix indexing a GTEx variant file- ':' delimited
snp next-gen Assembly
4.6 years ago by chrisclarkson100 ▴ 160
0
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0
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1.5k
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Comment: C: tabix indexing a GTEx variant file- ':' delimited
4.7 years ago by chrisclarkson100 ▴ 160
0
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0
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13k
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Comment: C: Convert SNPs from GrCh38 to 37
4.7 years ago by chrisclarkson100 ▴ 160
0
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1
reply
2.4k
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Comment: C: Apollo not downloadable on on Mac OSX
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 160
0
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1
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2.4k
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Comment: C: Apollo not downloadable on on Mac OSX
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 160
0
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1
reply
2.2k
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Comment: C: Common match hit between 1st and 2nd round PSI BLAST
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 160
0
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8
replies
2.4k
views
Apollo not downloadable on on Mac OSX
software error
updated 5.5 years ago by • 0 • written 9.4 years ago by ▴ 160
2
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4
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6.0k
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uploading bigwig file (converted from BED) to UCSC genome browser: Unrecognized format line 1
Assembly ChIP-Seq software error
updated 5.9 years ago by ▴ 40 • written 5.9 years ago by ▴ 160
0
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0
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6.0k
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Comment: C: uploading bigwig file (converted from BED) to UCSC genome browser: Unrecognized
5.9 years ago by chrisclarkson100 ▴ 160
0
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1
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6.0k
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Comment: C: uploading bigwig file (converted from BED) to UCSC genome browser: Unrecognized
5.9 years ago by chrisclarkson100 ▴ 160
0
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0
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2.4k
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Comment: C: MEME-Chip output lacks motif names
5.9 years ago by chrisclarkson100 ▴ 160
0
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1
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2.4k
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Comment: C: MEME-Chip output lacks motif names
5.9 years ago by chrisclarkson100 ▴ 160
1
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1
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2.5k
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Am I correctly converting MotifDb PFMs to PWMs?
sequence PWM PFM
6.4 years ago by chrisclarkson100 ▴ 160
1
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3
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1.5k
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imposing occupancy values from one bed file to different intervals
Assembly
updated 6.7 years ago by 20 • written 8.1 years ago by ▴ 160
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1
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4.2k
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Comment: C: trying to reproduce heat map made via cBioportal using download data
6.8 years ago by chrisclarkson100 ▴ 160
2
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12
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4.2k
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trying to reproduce heat map made via cBioportal using download data
RNA-Seq
updated 6.8 years ago by 89k • written 6.8 years ago by ▴ 160
0
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0
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4.2k
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Comment: C: trying to reproduce heat map made via cBioportal using download data
6.8 years ago by chrisclarkson100 ▴ 160
0
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1
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4.2k
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Comment: C: trying to reproduce heat map made via cBioportal using download data
6.8 years ago by chrisclarkson100 ▴ 160
0
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1
reply
1.7k
views
differential RNA seq analysis
rna-seq
updated 6.9 years ago by 9.0k • written 6.9 years ago by ▴ 160
0
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0
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1.9k
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can one assess the how well the output of ChromHMM fits the data given to it?
ChIP-Seq ChromHMM
7.4 years ago by chrisclarkson100 ▴ 160
9
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7
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3.9k
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SRA has done away with SRX experiment directories on FTP site: The web page at ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByExp/sra/SRX/.…
software error
7.4 years ago by chrisclarkson100 ▴ 160
3
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1
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3.9k
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Answer: A: The web page at ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByExp/sra
7.4 years ago by chrisclarkson100 ▴ 160
0
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1
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3.9k
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Comment: C: The web page at ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByExp/sra
7.4 years ago by chrisclarkson100 ▴ 160
5
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5
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2.8k
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separating bed file into separate files for every 100000 base pairs
Assembly
7.5 years ago by chrisclarkson100 ▴ 160
2
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2
replies
1.2k
views
sam to bam header not being retained
sequence
updated 7.5 years ago by 166k • written 7.5 years ago by ▴ 160
0
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1
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1.6k
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PFM for CTCF in mm9 extremely difficult to find- or does one exist?
Assembly
updated 7.6 years ago by ★ 18k • written 7.6 years ago by ▴ 160
0
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0
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2.8k
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Comment: C: separating bed file into separate files for every 100000 base pairs
7.6 years ago by chrisclarkson100 ▴ 160
6
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3
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3.8k
views
gc content file for human genome large and difficult to parse into separate chromosome files
Assembly
updated 7.6 years ago by 13k • written 7.6 years ago by ▴ 160
0
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1
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3.2k
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Comment: C: sam2bed processing paired-end data and producing unexpectedly short intervals in
7.6 years ago by chrisclarkson100 ▴ 160
0
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0
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3.2k
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Comment: C: sam2bed processing paired-end data and producing unexpectedly short intervals in
7.6 years ago by chrisclarkson100 ▴ 160
0
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1
reply
3.2k
views
Comment: C: sam2bed processing paired-end data and producing unexpectedly short intervals in
7.6 years ago by chrisclarkson100 ▴ 160
0
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1
reply
3.2k
views
Comment: C: sam2bed processing paired-end data and producing unexpectedly short intervals in
7.6 years ago by chrisclarkson100 ▴ 160
0
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1
reply
3.2k
views
Comment: C: sam2bed processing paired-end data and producing unexpectedly short intervals in
7.6 years ago by chrisclarkson100 ▴ 160
0
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0
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3.2k
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Comment: C: sam2bed processing paired-end data and producing unexpectedly short intervals in
7.6 years ago by chrisclarkson100 ▴ 160
0
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3
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3.2k
views
Comment: C: sam2bed processing paired-end data and producing unexpectedly short intervals in
7.6 years ago by chrisclarkson100 ▴ 160
0
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19
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3.2k
views
sam2bed processing paired-end data and producing unexpectedly short intervals in bed file....
alignment sam2bed
updated 7.6 years ago by 87k • written 7.6 years ago by ▴ 160
0
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1
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3.2k
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Comment: C: sam2bed producing unexpectedly short reads in bed file....
7.6 years ago by chrisclarkson100 ▴ 160
0
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0
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3.2k
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Comment: C: bowtie 2 mapping producing unexpectedly short reads in bed file....
7.6 years ago by chrisclarkson100 ▴ 160
0
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1
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2.6k
views
Comment: C: manipulating BED occupancy files' intervals
7.7 years ago by chrisclarkson100 ▴ 160
2
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0
replies
2.7k
views
Answer: A: Nucleosome positioning dataset
7.7 years ago by chrisclarkson100 ▴ 160
101 results • Page 1 of 3
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