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1
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6
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1.2k
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Does the order of the batch variable matter in Limma design matrix?
Batch
updated 9 weeks ago by ★ 7.7k • written 9 months ago by ▴ 120
0
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0
replies
190
views
Should I plot with methylDiff or methylBase object?
MethylKit
3 months ago by CTLong ▴ 120
0
votes
0
replies
170
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methRead takes too long
MethylKit
3 months ago by CTLong ▴ 120
0
votes
0
replies
1.1k
views
Comment: Comment: Speed up Seurat FindClusters execution?
5 months ago by CTLong ▴ 120
0
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3
replies
1.1k
views
Speed up Seurat FindClusters execution?
Seurat
5 months ago by CTLong ▴ 120
1
vote
0
replies
518
views
Comment: Comment: Fetch protein information of genes in a gene list
5 months ago by CTLong ▴ 120
4
votes
4
replies
518
views
Fetch protein information of genes in a gene list
protein gene
updated 5 months ago by 44k • written 5 months ago by ▴ 120
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1
reply
518
views
Comment: Comment: Fetch protein information of genes in a gene list
5 months ago by CTLong ▴ 120
0
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0
replies
224
views
Rescaling normalized enrichment score (NES)
heatmap
6 months ago by CTLong ▴ 120
0
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0
replies
383
views
Comment: Comment: ComplexHeatmap anno_mark position changes with height of gene expression heatmap
7 months ago by CTLong ▴ 120
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votes
0
replies
200
views
WGCNA modulePreservation on three expression sets
WGCNA
7 months ago by CTLong ▴ 120
1
vote
0
replies
309
views
Comment: Comment: Tool for gene function identification
7 months ago by CTLong ▴ 120
0
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0
replies
423
views
Comment: Comment: Gene set to perform GSVA
8 months ago by CTLong ▴ 120
0
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2
replies
423
views
Gene set to perform GSVA
GSVA
8 months ago by CTLong ▴ 120
1
vote
1
reply
383
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
7 months ago by CTLong ▴ 120
0
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0
replies
29k
views
Comment: Comment: Gene Set Enrichment Analysis after DESeq2
8 months ago by CTLong ▴ 120
0
votes
0
replies
214
views
Interpret ImpulseDE2 output?
RNA-seq
8 months ago by CTLong ▴ 120
0
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1
reply
1.2k
views
Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
8 months ago by CTLong ▴ 120
0
votes
1
reply
662
views
Answer: Answer: Differential gene expression design using Deseq2
updated 9 months ago by 44k • written 9 months ago by ▴ 120
1
vote
1
reply
407
views
Gene expression of microarray data
Microarray
updated 10 months ago by ★ 7.7k • written 10 months ago by ▴ 120
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0
replies
655
views
Answer: Answer: filtering lowly expressed reads
10 months ago by CTLong ▴ 120
0
votes
0
replies
629
views
Comment: Comment: Estimating the similarity of an RNA-seq sample based on a reference expression p
10 months ago by CTLong ▴ 120
1
vote
3
replies
629
views
Estimating the similarity of an RNA-seq sample based on a reference expression profile
RNA-seq
10 months ago by CTLong ▴ 120
0
votes
0
replies
393
views
Answer: Answer: insilico prediction of disulfide bonds in protein
10 months ago by CTLong ▴ 120
1
vote
1
reply
724
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
10 months ago by CTLong ▴ 120
0
votes
1
reply
724
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
10 months ago by CTLong ▴ 120
2
votes
5
replies
724
views
RNA-seq deconvolution algorithm that takes into account weight of marker gene
RNA-seq
updated 10 months ago by ★ 1.5k • written 10 months ago by ▴ 120
0
votes
1
reply
782
views
Comment: Comment: Difference between clipping and without clipping in Fastq-dump
10 months ago by CTLong ▴ 120
1
vote
3
replies
782
views
Difference between clipping and without clipping in Fastq-dump
SRAtoolkit
updated 10 months ago by 85k • written 10 months ago by ▴ 120
0
votes
0
replies
785
views
Comment: Comment: Obtain fitted data from DESeq2
10 months ago by CTLong ▴ 120
0
votes
1
reply
785
views
Comment: Comment: Obtain fitted data from DESeq2
10 months ago by CTLong ▴ 120
2
votes
4
replies
785
views
Obtain fitted data from DESeq2
DESeq2
10 months ago by CTLong ▴ 120
0
votes
0
replies
729
views
Comment: Comment: STAR SjdbOverHang specification
11 months ago by CTLong ▴ 120
0
votes
1
reply
729
views
Comment: Comment: STAR SjdbOverHang specification
11 months ago by CTLong ▴ 120
0
votes
3
replies
729
views
STAR SjdbOverHang specification
STAR
11 months ago by CTLong ▴ 120
2
votes
0
replies
774
views
Answer: Answer: Condition specific marker detection and problem with the distribution of cells f
11 months ago by CTLong ▴ 120
1
vote
1
reply
12k
views
Answer: Answer: ChatGPT optimized for bioinformatics questions
11 months ago by CTLong ▴ 120
0
votes
1
reply
716
views
Answer: Answer: Tutorials for Spatial Transcriptomics
11 months ago by CTLong ▴ 120
2
votes
1
reply
688
views
Answer: Answer: how to draw the valcano plot for DEGs in a different way
updated 11 months ago by 44k • written 11 months ago by ▴ 120
0
votes
0
replies
846
views
Comment: Comment: Best method for batch correction of three datasets
11 months ago by CTLong ▴ 120
2
votes
2
replies
846
views
Best method for batch correction of three datasets
RNA-seq
updated 11 months ago by 85k • written 11 months ago by ▴ 120
0
votes
0
replies
1.2k
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
11 months ago by CTLong ▴ 120
3
votes
4
replies
868
views
Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 11 months ago by ▴ 10 • written 12 months ago by ▴ 120
0
votes
1
reply
1.2k
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
11 months ago by CTLong ▴ 120
0
votes
0
replies
1.0k
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
12 months ago by CTLong ▴ 120
0
votes
0
replies
1.0k
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
12 months ago by CTLong ▴ 120
4
votes
4
replies
1.0k
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch-effect
updated 4 months ago by 44k • written 12 months ago by ▴ 120
0
votes
1
reply
868
views
Comment: Comment: Is bisulfite-seq data from different studies comparable with each other?
12 months ago by CTLong ▴ 120
1
vote
0
replies
645
views
Comment: Comment: Harmony integration PC variance explained
12 months ago by CTLong ▴ 120
0
votes
0
replies
867
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
12 months ago by CTLong ▴ 120
59 results • Page 1 of 2
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