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8
votes
5
replies
4.0k
views
Quickly get allele frequencies from Gnomad
gnomad allele freq ngs
updated 2.1 years ago by ▴ 50 • written 4.3 years ago by ▴ 170
0
votes
0
replies
1.2k
views
Comment: C: get rsID or positions from variant name/gene info
4.0 years ago by Floydian_slip ▴ 170
1
vote
2
replies
1.2k
views
get rsID or positions from variant name/gene info
clinvar dbSNP rsID variants
4.0 years ago by Floydian_slip ▴ 170
0
votes
0
replies
685
views
get cDNA start and end for exons in a list of genes
next-gen sequence gene
updated 18 months ago by 44k • written 4.1 years ago by ▴ 170
1
vote
7
replies
3.2k
views
average depth of each region in a BED file calculated from a BAM file
BED BAM coverage NGS
updated 3 months ago by • 0 • written 4.3 years ago by ▴ 170
0
votes
0
replies
3.2k
views
Answer: A: average depth of each region in a BED file calculated from a BAM file
4.2 years ago by Floydian_slip ▴ 170
0
votes
1
reply
3.2k
views
Comment: C: average depth of each region in a BED file calculated from a BAM file
updated 4.3 years ago by 44k • written 4.3 years ago by ▴ 170
0
votes
1
reply
3.2k
views
Comment: C: average depth of each region in a BED file calculated from a BAM file
4.3 years ago by Floydian_slip ▴ 170
0
votes
1
reply
4.0k
views
Comment: C: Quickly get allele frequencies from Gnomad
4.3 years ago by Floydian_slip ▴ 170
0
votes
1
reply
852
views
Comment: C: Is reusing a subset of features in another layer of classification wrong or over
4.7 years ago by Floydian_slip ▴ 170
0
votes
3
replies
852
views
Is reusing a subset of features in another layer of classification wrong or over-fitting?
machine learning overfitting overtraining
updated 4.7 years ago by ★ 28k • written 4.7 years ago by ▴ 170
0
votes
0
replies
1.7k
views
Confusing Picard HsMetrics ON_BAIT_VS_SELECTED for near=250 and near=0
sequencing next-gen picard HsMetrics
4.8 years ago by Floydian_slip ▴ 170
0
votes
1
reply
1.9k
views
Comment: C: high depth Illumina samples from 1000 Genomes
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 170
0
votes
1
reply
9.8k
views
Comment: C: difference between BWA mem, sampe and bwasw
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 170
0
votes
0
replies
1.3k
views
Comment: C: Calculate the area covered more than a certain depth
5.1 years ago by Floydian_slip ▴ 170
0
votes
1
reply
1.3k
views
Comment: C: Calculate the area covered more than a certain depth
5.1 years ago by Floydian_slip ▴ 170
0
votes
4
replies
1.3k
views
Calculate the area covered more than a certain depth
next-gen sequencing bam coverage
updated 5.1 years ago by ▴ 580 • written 5.1 years ago by ▴ 170
1
vote
3
replies
2.1k
views
Dragen alignment failing/terminating
dragen alignment
5.2 years ago by Floydian_slip ▴ 170
0
votes
1
reply
1.8k
views
Comment: C: List of conditions a set of genes are associated with in OMIM
5.2 years ago by Floydian_slip ▴ 170
5
votes
3
replies
1.8k
views
List of conditions a set of genes are associated with in OMIM
OMIM
updated 5.2 years ago by ▴ 610 • written 5.2 years ago by ▴ 170
0
votes
1
reply
1.0k
views
Comment: C: Bed file of union of all transcripts for a set of genes
5.2 years ago by Floydian_slip ▴ 170
0
votes
4
replies
1.0k
views
Bed file of union of all transcripts for a set of genes
transcripts gene exons
updated 5.2 years ago by ★ 3.9k • written 5.2 years ago by ▴ 170
3
votes
3
replies
2.9k
views
Popular CNV detection tools
CNV NGS
updated 5.2 years ago by 88k • written 5.2 years ago by ▴ 170
2
votes
5
replies
2.5k
views
Difference between variant calling and genotyping
variant calling genotyping
updated 5.2 years ago by 8.3k • written 5.2 years ago by ▴ 170
0
votes
0
replies
2.5k
views
Answer: A: Difference between variant calling and genotyping
5.2 years ago by Floydian_slip ▴ 170
0
votes
0
replies
2.6k
views
Using GIAB exome data to test targetome variant-calling pipeline
whole-exome targetome variant-calling GIAB
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 170
2
votes
1
reply
2.2k
views
Mapability index (track) from UCSC
UCSC mapability
updated 6.2 years ago by 44k • written 8.7 years ago by ▴ 170
4
votes
7
replies
5.4k
views
picard tools HsMetrics not using duplicate reads to calculate coverage
picard duplicates HsMetrics
updated 6.6 years ago by 20 • written 8.6 years ago by ▴ 170
0
votes
1
reply
1.8k
views
Comment: A: GATK HC not calling variants at the edges after clipping probes
6.9 years ago by Floydian_slip ▴ 170
1
vote
3
replies
1.8k
views
GATK HC not calling variants at the edges after clipping probes
GATK sequencing
6.9 years ago by Floydian_slip ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: Remove hundreds of probes
7.0 years ago by Floydian_slip ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: Remove hundreds of probes
7.0 years ago by Floydian_slip ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: Remove hundreds of probes
7.0 years ago by Floydian_slip ▴ 170
0
votes
1
reply
2.1k
views
Comment: C: Remove hundreds of probes
7.0 years ago by Floydian_slip ▴ 170
0
votes
12
replies
2.1k
views
Remove hundreds of probes
probes trimming
updated 7.0 years ago by ★ 2.5k • written 7.0 years ago by ▴ 170
1
vote
1
reply
4.9k
views
Comment: C: demultiplexing Illumina output with fastq_multx
7.1 years ago by Floydian_slip ▴ 170
0
votes
18
replies
5.9k
views
cuffmerge does not give merged.gtf
RNA-Seq Assembly sequencing alignment
updated 2.8 years ago by 44k • written 10.1 years ago by ▴ 170
0
votes
1
reply
5.4k
views
Comment: C: picard tools HsMetrics not using duplicate reads to calculate coverage
8.6 years ago by Floydian_slip ▴ 170
0
votes
1
reply
5.4k
views
Comment: C: picard tools HsMetrics not using duplicate reads to calculate coverage
8.6 years ago by Floydian_slip ▴ 170
0
votes
0
replies
5.4k
views
Comment: C: picard tools HsMetrics not using duplicate reads to calculate coverage
8.6 years ago by Floydian_slip ▴ 170
0
votes
5
replies
7.1k
views
Picard MarkDuplicates error: Value was put into PairInfoMap more than once
Bedtools MarkDuplicates Samtools picard
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 170
7
votes
8
replies
4.4k
views
Similarity between two sets of paired-end fastq files
fastq paired-end RNA-Seq
updated 8.7 years ago by ▴ 480 • written 8.7 years ago by ▴ 170
0
votes
0
replies
4.4k
views
Comment: C: Similarity between two sets of paired-end fastq files
8.7 years ago by Floydian_slip ▴ 170
0
votes
0
replies
4.4k
views
Comment: C: Similarity between two sets of paired-end fastq files
8.7 years ago by Floydian_slip ▴ 170
0
votes
1
reply
3.4k
views
Comment: C: QC tool for targeted gene panel (like FastQC for WGS)
8.7 years ago by Floydian_slip ▴ 170
0
votes
1
reply
3.4k
views
Comment: C: QC tool for targeted gene panel (like FastQC for WGS)
8.7 years ago by Floydian_slip ▴ 170
5
votes
6
replies
3.4k
views
QC tool for targeted gene panel (like FastQC for WGS)
QC targeted-gene panel
updated 8.7 years ago by 8.3k • written 8.7 years ago by ▴ 170
1
vote
0
replies
2.9k
views
Comment: C: extracting genotypes from a multi-sample VCF that have certain variants
8.7 years ago by Floydian_slip ▴ 170
0
votes
1
reply
2.9k
views
Comment: C: extracting genotypes from a multi-sample VCF that have certain variants
8.7 years ago by Floydian_slip ▴ 170
1
vote
3
replies
2.9k
views
extracting genotypes from a multi-sample VCF that have certain variants
vcf genotypes
8.7 years ago by Floydian_slip ▴ 170
68 results • Page 1 of 2
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