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3
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3.7k
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What is the Sleuth intercept and how can Sleuth be used when you have >2 treatment types?
RNA-Seq sleuth kallisto salmon DTE
updated 6.6 years ago by ▴ 10 • written 8.4 years ago by ▴ 100
0
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1
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21k
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Comment: C: Scatter Plot For Correlations With Heatdensity
updated 5.5 years ago by 45k • written 10.7 years ago by ▴ 100
2
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4
replies
2.9k
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Looking for changes in expression of transposable elements in human cells
RNA-Seq transposable elements expression
updated 6.1 years ago by ▴ 10 • written 8.7 years ago by ▴ 100
0
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0
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1.9k
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Repeat masked GFF3 not being converted to GTF
GTF GFF GFF3 Cufflinks
7.6 years ago by james.lloyd ▴ 100
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0
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5.6k
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Comment: C: Is Sleuth a good package?
8.4 years ago by james.lloyd ▴ 100
2
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2
replies
7.1k
views
ggplot histogram normalize the tallest bin to 1 and adjust all others accordingly?
ggplot r plots histogram
updated 8.6 years ago by ▴ 620 • written 8.6 years ago by ▴ 100
5
votes
6
replies
6.9k
views
What does Ensembl/Genecode gene_type "processed_gene" really mean?
RNA-Seq annotation ensembl
updated 8.7 years ago by 21k • written 8.7 years ago by ▴ 100
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0
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6.9k
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Comment: C: What does Ensembl/Genecode gene_type "processed_gene" really mean?
8.7 years ago by james.lloyd ▴ 100
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0
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2.9k
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Comment: C: Looking for changes in expression of transposable elements in human cells
8.7 years ago by james.lloyd ▴ 100
0
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0
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3.0k
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Comment: C: RNA-Seq analysis for individual genes
8.7 years ago by james.lloyd ▴ 100
4
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1
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49k
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In ggplot, assign a variable/category to a specific color?
R ggplot plots colors
updated 8.7 years ago by 20 • written 8.9 years ago by ▴ 100
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2
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3.0k
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Comment: C: RNA-Seq analysis for individual genes
8.9 years ago by james.lloyd ▴ 100
3
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0
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49k
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Answer: C: In ggplot, assign a variable/category to a specific color?
8.9 years ago by james.lloyd ▴ 100
0
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0
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2.2k
views
Comment: C: Find R color reference for colors in a palette?
8.9 years ago by james.lloyd ▴ 100
0
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1
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3.0k
views
Answer: A: RNA-Seq analysis for individual genes
8.9 years ago by james.lloyd ▴ 100
1
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2
replies
2.2k
views
Find R color reference for colors in a palette?
R ggplot plots colors
updated 8.9 years ago by 36k • written 8.9 years ago by ▴ 100
0
votes
1
reply
2.8k
views
Switch genomic coordinates to transcriptomic coordinates
RNA-Seq fasta coordinates gene
updated 9.0 years ago by ▴ 140 • written 9.0 years ago by ▴ 100
1
vote
1
reply
3.4k
views
Comment: C: Unusual pyramid plot helpin R or matplotlib
9.1 years ago by james.lloyd ▴ 100
0
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1
reply
3.4k
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Comment: C: Unusual pyramid plot helpin R or matplotlib
9.1 years ago by james.lloyd ▴ 100
0
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1
reply
3.4k
views
Comment: C: Unusual pyramid plot helpin R or matplotlib
9.1 years ago by james.lloyd ▴ 100
5
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6
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3.4k
views
Unusual pyramid plot helpin R or matplotlib
R plot matplotlib
updated 9.1 years ago by ▴ 620 • written 9.1 years ago by ▴ 100
0
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1
reply
27k
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Comment: A: Converting TCGA expression data from FPKM to TPM
9.2 years ago by james.lloyd ▴ 100
2
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2
replies
4.9k
views
How to find transposable element genes in ensembl annotation
RNA-Seq GTF transposable_elements Ensembl
updated 2.9 years ago by 45k • written 9.6 years ago by ▴ 100
0
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0
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3.0k
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Convert TAIR IDs to NCBI IDs for Gorilla
TAIR GO RNA-Seq
updated 3.1 years ago by 45k • written 9.8 years ago by ▴ 100
1
vote
0
replies
7.1k
views
Comment: Comment: Program For Flagging Alternative Splicing Events From A Genome Annotation
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 100
0
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0
replies
2.4k
views
Comment: Comment: Would Tophat place 3-5 mismatches in a row if I raised default mismatches allowe
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 100
0
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1
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2.4k
views
Comment: Comment: Would Tophat place 3-5 mismatches in a row if I raised default mismatches allowe
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 100
0
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1
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2.4k
views
Comment: Comment: Would Tophat place 3-5 mismatches in a row if I raised default mismatches allowe
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 100
0
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6
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2.4k
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Would Tophat place 3-5 mismatches in a row if I raised default mismatches allowed?
RNA-Seq Tophat
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 100
0
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0
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3.2k
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Comment: Comment: Annotate transcript isoforms from Cufflinks GTF with splicing types
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 100
3
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2
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3.2k
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Annotate transcript isoforms from Cufflinks GTF with splicing types
Cufflinks RNA-Seq Splicing-Annotation GTF
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 100
0
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0
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2.6k
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Answer: Answer: Annotation file formats
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 100
1
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1
reply
7.1k
views
Comment: Comment: Program For Flagging Alternative Splicing Events From A Genome Annotation
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 100
0
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0
replies
4.1k
views
Comment: Comment: How many poor quality bases define a bad read (using fastx or equivalent)?
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 100
0
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6
replies
4.1k
views
How many poor quality bases define a bad read (using fastx or equivalent)?
RNA-Seq sequencing quality fastq fastx
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 100
0
votes
0
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4.1k
views
Comment: Comment: How many poor quality bases define a bad read (using fastx or equivalent)?
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 100
0
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1
reply
4.1k
views
Comment: Comment: How many poor quality bases define a bad read (using fastx or equivalent)?
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 100
0
votes
0
replies
1.6k
views
Efficiency of human or mouse iPS cells to muscle or liver cells
iPS-cells stem-cells ES-cells RNA-Seq
updated 3.1 years ago by 45k • written 10.2 years ago by ▴ 100
0
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0
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7.6k
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Comment: Comment: Can you add a label key to heatscatter plot in R?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 100
0
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0
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7.6k
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Comment: Comment: Can you add a label key to heatscatter plot in R?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 100
0
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1
reply
7.6k
views
Comment: Comment: Can you add a label key to heatscatter plot in R?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 100
0
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0
replies
7.6k
views
Comment: C: Can you add a label key to heatscatter plot in R?
updated 4.2 years ago by 45k • written 10.7 years ago by ▴ 100
6
votes
17
replies
7.6k
views
Can you add a label key to heatscatter plot in R?
heatscatter visualization R
updated 14 months ago by 45k • written 10.7 years ago by ▴ 100
0
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0
replies
7.6k
views
Comment: Comment: Can you add a label key to heatscatter plot in R?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 100
0
votes
1
reply
7.6k
views
Comment: Comment: Can you add a label key to heatscatter plot in R?
updated 3.4 years ago by 45k • written 10.7 years ago by ▴ 100
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