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Ran dipSpades for a diploid fungus genome -- now what?
diploid genome assembly dipspades
updated 4.8 years ago by 20 • written 7.7 years ago by ▴ 200
3
votes
11
replies
18k
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SPAdes is running out of memory
spades hybrid assembly fungi memory
updated 4.9 years ago by • 0 • written 7.9 years ago by ▴ 200
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0
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3.5k
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Comment: C: SPAdes error code -6
5.9 years ago by Lina F ▴ 200
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1
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3.5k
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Comment: C: SPAdes error code -6
5.9 years ago by Lina F ▴ 200
0
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3
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3.5k
views
SPAdes error code -6
SPAdes metagenomics Assembly
6.0 years ago by Lina F ▴ 200
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0
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2.7k
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Comment: C: How does bbduk calculate it's memory requirements?
6.1 years ago by Lina F ▴ 200
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1
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2.7k
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Comment: C: How does bbduk calculate it's memory requirements?
6.1 years ago by Lina F ▴ 200
2
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4
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2.7k
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How does bbduk calculate it's memory requirements?
bbduk docker memory
6.1 years ago by Lina F ▴ 200
0
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0
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2.2k
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Comment: C: Ran dipSpades for a diploid fungus genome -- now what?
6.2 years ago by Lina F ▴ 200
0
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0
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2.1k
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Comment: C: Error building snpEff database "Transcript 'hypothetical_protein' already exist
6.9 years ago by Lina F ▴ 200
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0
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2.1k
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Comment: C: Error building snpEff database "Transcript 'hypothetical_protein' already exist
6.9 years ago by Lina F ▴ 200
2
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5
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2.1k
views
Error building snpEff database "Transcript 'hypothetical_protein' already exists"
snpeff database build
updated 2.2 years ago by • 0 • written 6.9 years ago by ▴ 200
0
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0
replies
3.3k
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Comment: C: Running two bedtools commands in series produces error "has non positional recor
6.9 years ago by Lina F ▴ 200
0
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0
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3.3k
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Answer: A: Running two bedtools commands in series produces error "has non positional recor
6.9 years ago by Lina F ▴ 200
2
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6
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3.3k
views
Running two bedtools commands in series produces error "has non positional records"
bedtools vcf
6.9 years ago by Lina F ▴ 200
0
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0
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3.3k
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Comment: C: Running two bedtools commands in series produces error "has non positional recor
6.9 years ago by Lina F ▴ 200
0
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0
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3.8k
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Comment: C: Jellyfish: every other kmer count is zero
7.1 years ago by Lina F ▴ 200
3
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2
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3.8k
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Jellyfish: every other kmer count is zero
kmer counting jellyfish genome size estimation
7.1 years ago by Lina F ▴ 200
0
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0
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3.3k
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Comment: C: Visualizing whole genome alignment beyond dotplots
7.4 years ago by Lina F ▴ 200
0
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1
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3.3k
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Comment: C: Visualizing whole genome alignment beyond dotplots
7.4 years ago by Lina F ▴ 200
0
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4
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3.3k
views
Visualizing whole genome alignment beyond dotplots
dotplot visualization alignment whole genome
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 200
0
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0
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4.6k
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Comment: C: Removing common SNPs from a set of VCF files
7.7 years ago by Lina F ▴ 200
4
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2
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4.6k
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Removing common SNPs from a set of VCF files
SNP vcf filtering
7.7 years ago by Lina F ▴ 200
0
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0
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2.2k
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Comment: C: Ran dipSpades for a diploid fungus genome -- now what?
7.7 years ago by Lina F ▴ 200
0
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1
reply
5.3k
views
Comment: C: How to filter SNPs after Freebayes, if at all, in a fungal haploid genome alignm
7.8 years ago by Lina F ▴ 200
1
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3
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5.3k
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How to filter SNPs after Freebayes, if at all, in a fungal haploid genome alignment?
freebayes SNP filtering
7.8 years ago by Lina F ▴ 200
0
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1
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4.1k
views
Comment: C: Align two microbial genomes -- is mummer still the way to go?
7.8 years ago by Lina F ▴ 200
3
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4
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4.1k
views
Align two microbial genomes -- is mummer still the way to go?
genome alignment mummer nucmer snps vcf
7.8 years ago by Lina F ▴ 200
0
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0
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42k
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Comment: C: Duplicates on Illumina
7.8 years ago by Lina F ▴ 200
0
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1
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42k
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Comment: C: Duplicates on Illumina
7.8 years ago by Lina F ▴ 200
0
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2
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42k
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Comment: C: Duplicates on Illumina
7.8 years ago by Lina F ▴ 200
0
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2
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42k
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Comment: C: Duplicates on Illumina
7.8 years ago by Lina F ▴ 200
0
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0
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18k
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Comment: C: SPAdes is running out of memory
7.9 years ago by Lina F ▴ 200
0
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0
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18k
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Comment: C: SPAdes is running out of memory
7.9 years ago by Lina F ▴ 200
0
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1
reply
18k
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Comment: C: SPAdes is running out of memory
7.9 years ago by Lina F ▴ 200
0
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1
reply
18k
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Comment: C: SPAdes is running out of memory
7.9 years ago by Lina F ▴ 200
0
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1
reply
18k
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Comment: C: SPAdes is running out of memory
7.9 years ago by Lina F ▴ 200
0
votes
1
reply
18k
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Comment: C: SPAdes is running out of memory
7.9 years ago by Lina F ▴ 200
1
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0
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20k
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Answer: A: Issues installing bcl2fastq?
7.9 years ago by Lina F ▴ 200
0
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0
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1.5k
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Upcoming workshops tackling data analysis of hybrid sequencing technologies?
nanopore minion workshop hybrid sequencing
7.9 years ago by Lina F ▴ 200
0
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0
replies
9.4k
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Comment: C: How to get fasta sequences of features from a GFF3 file?
7.9 years ago by Lina F ▴ 200
6
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9
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9.4k
views
How to get fasta sequences of features from a GFF3 file?
gff3 fasta parser
updated 7.9 years ago by 10k • written 7.9 years ago by ▴ 200
0
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0
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5.8k
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Comment: C: Demultiplexing reads from two libraries (single and dual indices) that were sequ
7.9 years ago by Lina F ▴ 200
0
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1
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5.8k
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Comment: C: Demultiplexing reads from two libraries (single and dual indices) that were sequ
7.9 years ago by Lina F ▴ 200
0
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0
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5.5k
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Comment: C: How to assemble complex soil metagenome datasets?
7.9 years ago by Lina F ▴ 200
0
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1
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5.5k
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Comment: C: How to assemble complex soil metagenome datasets?
7.9 years ago by Lina F ▴ 200
0
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0
replies
5.8k
views
Comment: C: Demultiplexing reads from two libraries (single and dual indices) that were sequ
7.9 years ago by Lina F ▴ 200
0
votes
1
reply
5.8k
views
Comment: C: Demultiplexing reads from two libraries (single and dual indices) that were sequ
7.9 years ago by Lina F ▴ 200
1
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8
replies
5.8k
views
Demultiplexing reads from two libraries (single and dual indices) that were sequenced in the same sequencing run
demultiplexing nextseq bcl2fastq
updated 7.9 years ago by 35k • written 7.9 years ago by ▴ 200
6
votes
5
replies
5.5k
views
How to assemble complex soil metagenome datasets?
metagenomics assembly soil
updated 8.0 years ago by 22k • written 8.0 years ago by ▴ 200
92 results • Page 1 of 2
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