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0
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380
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Comment:
Comment: Advice for analyzing SnpEff results
5 months ago by
ekirsch
• 0
0
votes
2
replies
380
views
Advice for analyzing SnpEff results
snpsift
snpeff
vcf
updated 5 months ago by
Ram
44k • written 5 months ago by
ekirsch
• 0
0
votes
0
replies
240
views
advice for wattersons theta calculation using vcf file
diversity
vcf
theta
5 months ago by
ekirsch
• 0
1
vote
1
reply
334
views
Comparing quality across samples in a VCF
vcf
updated 5 months ago by
Ram
44k • written 6 months ago by
ekirsch
• 0
0
votes
0
replies
268
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
7 months ago by
ekirsch
• 0
0
votes
0
replies
672
views
Comment:
Comment: vcf file: number of samples does not match number of columns
8 months ago by
ekirsch
• 0
0
votes
2
replies
672
views
vcf file: number of samples does not match number of columns
vcf
bcftools
8 months ago by
ekirsch
• 0
0
votes
1
reply
750
views
Comment:
Comment: Issues filtering VCF file with bcftools/vcftools
8 months ago by
ekirsch
• 0
0
votes
1
reply
750
views
Comment:
Comment: Issues filtering VCF file with bcftools/vcftools
updated 8 months ago by
Pierre Lindenbaum
164k • written 8 months ago by
ekirsch
• 0
1
vote
1
reply
562
views
Advice for genetic diversity stats analysis with both variant and variant sites
pi
diversity
vcf
genetics
updated 8 months ago by
dthorbur
★ 2.5k • written 8 months ago by
ekirsch
• 0
0
votes
5
replies
750
views
Issues filtering VCF file with bcftools/vcftools
vcftools
vcf
bcftools
updated 8 months ago by
Pierre Lindenbaum
164k • written 8 months ago by
ekirsch
• 0
0
votes
0
replies
548
views
Comment:
Comment: vcf-validator could not parse the alleles
9 months ago by
ekirsch
• 0
1
vote
2
replies
548
views
vcf-validator could not parse the alleles
vcf-validator
vcftools
vcf
9 months ago by
ekirsch
• 0
0
votes
0
replies
335
views
How to use --chr flag (vcftools --LROH) with a vcf file that uses scaffold notation
vcftools
scaffold
ROH
10 months ago by
ekirsch
• 0
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