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3
votes
1
reply
4.1k
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Answer: A: Ensembl Perl API - How to get genotype frequencies
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 570
0
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2
replies
4.0k
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Comment: C: Named variants to Rsids or coordinates or Haplotype?
updated 5.6 years ago by 45k • written 10.0 years ago by ▴ 570
5
votes
0
replies
2.8k
views
Answer: A: VEP JSON output parsing
7.9 years ago by EnsemblWill ▴ 570
4
votes
0
replies
4.6k
views
Answer: A: How to filter mutant allele frequency in Variant Effect Predictor (VEP)?
8.0 years ago by EnsemblWill ▴ 570
3
votes
1
reply
2.6k
views
Answer: A: Why annotation doesn't respect VCF field schema ?
8.3 years ago by EnsemblWill ▴ 570
0
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0
replies
3.9k
views
Answer: A: Using VEP: Variant Effect Predictor, how do I get the 1000G global Allele Freque
8.5 years ago by EnsemblWill ▴ 570
1
vote
1
reply
4.1k
views
Answer: A: Plugin 'dbNSFP' of VEP went wrong
8.8 years ago by EnsemblWill ▴ 570
2
votes
0
replies
13k
views
Comment: C: Annotating TCGA MAFs with the latest Ensembl/Gencode transcripts
updated 9.0 years ago by 152k • written 9.0 years ago by ▴ 570
3
votes
1
reply
7.3k
views
Answer: A: VEP failed to parse TBX_GENERIC error
9.7 years ago by EnsemblWill ▴ 570
0
votes
0
replies
4.1k
views
Comment: Comment: Ensembl Perl API - How to get genotype frequencies
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 570
1
vote
0
replies
2.5k
views
Answer: Answer: Ensembl variant effect predictor bigWigToWig
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 570
1
vote
1
reply
3.1k
views
Comment: Comment: ANNOVAR ability to report reference and mutant codon
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 570
0
votes
0
replies
4.0k
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Comment: C: Named variants to Rsids or coordinates or Haplotype?
10.0 years ago by EnsemblWill ▴ 570
3
votes
0
replies
5.2k
views
Answer: Answer: How to annotate a VCF with Entrez Gene IDs
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 570
3
votes
1
reply
3.3k
views
Answer: Answer: Variant Effect Predictor warnings Chromosome 'p' not found in cache
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 570
0
votes
0
replies
6.7k
views
Comment: Comment: VCF format conventions for multi-sample vs. single-sample data
updated 2.4 years ago by 45k • written 10.1 years ago by ▴ 570
4
votes
0
replies
3.3k
views
Answer: Answer: How to find all the Somatic Mutations in a Chromosome
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 570
0
votes
0
replies
2.6k
views
Comment: C: Splice Site Frequency/ Pathogenicity Data
10.2 years ago by EnsemblWill ▴ 570
0
votes
1
reply
5.0k
views
Comment: Comment: VEP: SIFT- PolyPhen error?
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 570
0
votes
1
reply
5.0k
views
Comment: C: VEP: SIFT- PolyPhen error?
10.2 years ago by EnsemblWill ▴ 570
0
votes
1
reply
5.0k
views
Comment: Comment: VEP: SIFT- PolyPhen error?
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 570
0
votes
0
replies
5.0k
views
Comment: C: VEP: SIFT- PolyPhen error?
10.2 years ago by EnsemblWill ▴ 570
5
votes
0
replies
5.8k
views
Answer: Answer: Variant Effect Predictor plugin for ExAC frequencies
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 570
0
votes
1
reply
11k
views
Comment: C: Obtain MAF from VCF
10.3 years ago by EnsemblWill ▴ 570
0
votes
1
reply
11k
views
Comment: Comment: Obtain MAF from VCF
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 570
4
votes
1
reply
5.9k
views
Answer: Answer: memory usage and run time for VEP whole genome variant annotation?
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 570
1
vote
2
replies
11k
views
Comment: Comment: Obtain MAF from VCF
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 570
0
votes
1
reply
11k
views
Comment: Comment: Obtain MAF from VCF
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 570
2
votes
1
reply
11k
views
Answer: Answer: Obtain MAF from VCF
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 570
0
votes
0
replies
11k
views
Comment: C: Obtain MAF from VCF
10.3 years ago by EnsemblWill ▴ 570
1
vote
0
replies
2.2k
views
Answer: Answer: extract/download graphs from VEP summary page?
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 570
7
votes
2
replies
6.9k
views
Answer: Answer: Ensembl VEP filtering most_severe keeping Symbol, Feature,Consequence etc.
updated 3.3 years ago by 45k • written 10.6 years ago by ▴ 570
4
votes
1
reply
9.8k
views
Answer: Answer: HGVS to VCF conversion
updated 3.6 years ago by 45k • written 10.6 years ago by ▴ 570
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