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7
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0
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9.6k
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Answer: A: How to filter short length blast results from output
updated 5.2 years ago by 44k • written 9.3 years ago by ★ 1.9k
1
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2
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7.7k
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Comment: C: Rename Duplicate ID's for Different Fasta Sequences on Windows 7
updated 5.3 years ago by 44k • written 10.0 years ago by ★ 1.9k
2
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1
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7.7k
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Comment: C: Rename Duplicate ID's for Different Fasta Sequences on Windows 7
updated 5.3 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
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0
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2.6k
views
Answer: A: Using R to calculate diversity between hundreds of orthologous sequences
updated 5.3 years ago by 44k • written 10.1 years ago by ★ 1.9k
1
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1
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3.7k
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Comment: C: Redundancy removal before HMM profiles are made ?
updated 5.3 years ago by 44k • written 10.2 years ago by ★ 1.9k
1
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0
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3.0k
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Answer: A: Best way to find phage genes in microbiome?
updated 5.3 years ago by 44k • written 10.2 years ago by ★ 1.9k
1
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0
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15k
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Answer: A: Available pipelines for functional annotaiton (COG, KEGG, GO) of genomes
updated 5.3 years ago by 44k • written 10.3 years ago by ★ 1.9k
0
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1
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3.0k
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Answer: Answer: how to test if BLAST installed in perl script?
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
0
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1
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3.0k
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Comment: C: how to test if BLAST installed in perl script?
updated 5.4 years ago by 44k • written 10.1 years ago by ★ 1.9k
4
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2
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39k
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Comment: C: BLAST, setting maximum number of hits
updated 6.0 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
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0
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4.4k
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Answer: Answer: How to know the query coverage
updated 2.4 years ago by 44k • written 9.3 years ago by ★ 1.9k
0
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2
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3.0k
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Answer: A: -perc_query in local blast searches
9.3 years ago by Siva ★ 1.9k
0
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0
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2.6k
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Answer: A: Stop BLAST search on any hit
9.3 years ago by Siva ★ 1.9k
0
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0
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10k
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Comment: Comment: get protein sequences from genbank
updated 2.4 years ago by 44k • written 9.4 years ago by ★ 1.9k
2
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1
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4.5k
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Answer: A: Database to download HMMs for TIGRFAMS and PFAMS ?
9.4 years ago by Siva ★ 1.9k
0
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0
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3.8k
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Answer: A: Downloading protein sequences for a set of chromosomes from NCBI
9.4 years ago by Siva ★ 1.9k
0
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0
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1.9k
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Answer: Answer: Identify homolog sequences that appear in multiple RefSeq files
updated 2.4 years ago by 44k • written 9.4 years ago by ★ 1.9k
0
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1
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4.6k
views
Comment: Comment: What is in the NCBI chromosome nucleotide database vs nt/refseq_genomic?
updated 2.4 years ago by 44k • written 9.4 years ago by ★ 1.9k
0
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0
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4.2k
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Comment: C: Extract sequences based on keywords in headers (no perl or python code)
9.4 years ago by Siva ★ 1.9k
2
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1
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4.6k
views
Answer: Answer: What is in the NCBI chromosome nucleotide database vs nt/refseq_genomic?
updated 2.4 years ago by 44k • written 9.4 years ago by ★ 1.9k
1
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0
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1.8k
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Comment: C: what is the best way to look up for a certain nucleotide seq in a specific organ
9.9 years ago by Siva ★ 1.9k
1
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0
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3.5k
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Comment: C: Homology ratio for different species query
9.9 years ago by Siva ★ 1.9k
0
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1
reply
6.2k
views
Comment: C: "Protein search using Blastp" vs "protein search using hmm profile"
10.0 years ago by Siva ★ 1.9k
1
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1
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6.2k
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Answer: A: "Protein search using Blastp" vs "protein search using hmm profile"
10.0 years ago by Siva ★ 1.9k
0
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0
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4.1k
views
Answer: A: Mapping peptide to the source genomic region
10.0 years ago by Siva ★ 1.9k
1
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0
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6.8k
views
Comment: C: Low bootstrap phylogenetic trees
10.0 years ago by Siva ★ 1.9k
0
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0
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16k
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Comment: Comment: BLAST via Biopython NCBIWWW. Where can I find the complete database list?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.9k
2
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1
reply
1.6k
views
Forum: If cars were made by bioinformaticians...
bioinfomatics-humor
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
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1
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2.5k
views
Comment: Comment: Can I reach NCBI protein sequences with their corresponding NCBI urls?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.9k
5
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1
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2.5k
views
Answer: A: Can I reach NCBI protein sequences with their corresponding NCBI urls?
10.0 years ago by Siva ★ 1.9k
7
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2
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16k
views
Answer: Answer: BLAST via Biopython NCBIWWW. Where can I find the complete database list?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
votes
1
reply
16k
views
Comment: Comment: BLAST via Biopython NCBIWWW. Where can I find the complete database list?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
votes
1
reply
16k
views
Comment: Comment: BLAST via Biopython NCBIWWW. Where can I find the complete database list?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.9k
1
vote
1
reply
16k
views
Comment: Comment: BLAST via Biopython NCBIWWW. Where can I find the complete database list?
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
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0
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2.4k
views
Answer: Answer: Cancer related Pathway Annotations
updated 2.9 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
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0
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2.4k
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Answer: Answer: makeblastdb with organism names instead of gi number
updated 2.9 years ago by 44k • written 10.0 years ago by ★ 1.9k
0
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0
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4.5k
views
Answer: Answer: Draw heatmaps for large dataset 2000x40
updated 2.9 years ago by 44k • written 10.0 years ago by ★ 1.9k
3
votes
0
replies
1.9k
views
Answer: Answer: What is this alignment program? [Pictured]
updated 2.9 years ago by 44k • written 10.0 years ago by ★ 1.9k
2
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1
reply
2.8k
views
Answer: A: Terminology for "amino acid frame"
10.1 years ago by Siva ★ 1.9k
0
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0
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3.1k
views
Answer: A: Raxml continue interrupted bootstrap run
10.1 years ago by Siva ★ 1.9k
1
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0
replies
3.8k
views
Answer: A: Homologous gene matching between mouse and human
10.1 years ago by Siva ★ 1.9k
2
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0
replies
4.8k
views
Answer: A: Makeblastdb - parallel speed ups?
10.1 years ago by Siva ★ 1.9k
0
votes
1
reply
6.9k
views
Comment: Comment: Removing identifier with "unavailable sequence" from FASTA file
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
0
votes
1
reply
6.9k
views
Comment: Comment: Removing identifier with "unavailable sequence" from FASTA file
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
0
votes
1
reply
6.9k
views
Comment: Comment: Removing identifier with "unavailable sequence" from FASTA file
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
0
votes
0
replies
6.9k
views
Comment: Comment: Removing identifier with "unavailable sequence" from FASTA file
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
1
vote
1
reply
6.9k
views
Answer: Answer: Removing identifier with "unavailable sequence" from FASTA file
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
0
votes
0
replies
4.2k
views
Comment: Comment: restricting number of hits for blastn execution format
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
1
vote
1
reply
2.7k
views
Comment: Comment: USEARCH for orthologous genes identification
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
2
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1
reply
4.3k
views
Comment: Comment: BLAST result showing greater sequence length in %identities than that of the que
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
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