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How to create a signature matrix, using scRNA-seq data, for downstream CIBERSORTx deconvolution of bulk data when the data is too heavy?
CIBERSORTx deconvolution Seurat scRNA-seq bulkRNA-seq
7 days ago by Fossil ▴ 30
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1
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373
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Poor alignment post-SortMeRNA (rRNA removal)
STAR rRNA RNAseq SortMeRNA
updated 5 months ago by 3.8k • written 5 months ago by ▴ 30
1
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724
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Comment: Comment: GSEA with fgsea package and using stat from DESeq2 output - what to do with NA p
5 months ago by Fossil ▴ 30
6
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3
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724
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GSEA with fgsea package and using stat from DESeq2 output - what to do with NA padj values?
RNA-seq DESeq2 GSEA
5 months ago by Fossil ▴ 30
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0
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494
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Comment: Comment: Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
5 months ago by Fossil ▴ 30
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2
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494
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Small secondary peak for per sequence GC content - FASTQC results (bulk RNA-seq)
RNAseq
updated 6 months ago by 147k • written 6 months ago by ▴ 30
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