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0
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0
replies
336
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Compute percentage normalization of gene expression in diseased samples vs healthy controls
statistics RNA-seq DESeq2
9 months ago by Dataminer ★ 2.8k
39
votes
11
replies
18k
views
11 follow
Best Database Of Transcription Factor Binding Sites
transcription binding database
updated 2.3 years ago by • 0 • written 14.1 years ago by ★ 2.8k
1
vote
2
replies
2.2k
views
SmartSeq2 with STARsolo gives only one cell
scRNA-seq SmartSeq STARsolo
updated 3.0 years ago by 87k • written 3.2 years ago by ★ 2.8k
1
vote
1
reply
1.7k
views
Comment: Comment: Free lancer or Contractor for scRNA seq data analysis pipeline
3.2 years ago by Dataminer ★ 2.8k
4
votes
2
replies
1.7k
views
Job: Free lancer or Contractor for scRNA seq data analysis pipeline
scRNA-seq
updated 3.2 years ago by 21k • written 3.2 years ago by ★ 2.8k
0
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1
reply
3.7k
views
Comment: Comment: Creating reference genome for mapping and then selecting
4.1 years ago by Dataminer ★ 2.8k
0
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0
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3.7k
views
Comment: Comment: Creating reference genome for mapping and then selecting
4.1 years ago by Dataminer ★ 2.8k
4
votes
6
replies
3.7k
views
Creating reference genome for mapping and then selecting
mm10 hg38 STAR RNA-seq
updated 4.1 years ago by 102k • written 4.1 years ago by ★ 2.8k
1
vote
1
reply
999
views
bwa mem piped to samtools is not working strange error
samtools bwa mem
4.2 years ago by Dataminer ★ 2.8k
0
votes
3
replies
3.7k
views
Shiny board with seurat object
Seurat Shiny
updated 4.3 years ago by ▴ 390 • written 4.4 years ago by ★ 2.8k
2
votes
1
reply
1.4k
views
to consider only intronic reads in cell ranger pipeline
cell ranger snRNA
updated 4.4 years ago by 13k • written 4.4 years ago by ★ 2.8k
0
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0
replies
3.7k
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Comment: C: Shiny board with seurat object
4.4 years ago by Dataminer ★ 2.8k
2
votes
1
reply
2.6k
views
How to tackle low reads in RNA-Seq data and compute differential expression
RNA-Seq RSEM STAR
updated 4.7 years ago by 20 • written 9.0 years ago by ★ 2.8k
7
votes
4
replies
2.2k
views
Mismatch in probe ids
Affymetrix Microarray
updated 4.9 years ago by 89k • written 4.9 years ago by ★ 2.8k
18
votes
8
replies
3.9k
views
Open Question For Bioinformaticians .... Need Some Ideas
chip-seq
updated 4.9 years ago by 20 • written 12.7 years ago by ★ 2.8k
0
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0
replies
2.0k
views
Comment: C: Processing bulk RNA-seq TMM matrix to get DEGs
5.1 years ago by Dataminer ★ 2.8k
3
votes
6
replies
2.0k
views
Processing bulk RNA-seq TMM matrix to get DEGs
RNA-Seq
updated 5.1 years ago by 87k • written 5.1 years ago by ★ 2.8k
0
votes
1
reply
3.1k
views
Comment: C: Snps In Protein Domains
updated 5.4 years ago by 45k • written 10.6 years ago by ★ 2.8k
0
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1
reply
5.1k
views
Comment: C: Heatmap to identify differential regions between 2 groups
updated 5.4 years ago by 45k • written 9.3 years ago by ★ 2.8k
1
vote
0
replies
3.1k
views
Comment: C: Identification Of Genomic Regions Where Multiple Tf Binds.
updated 5.4 years ago by 45k • written 13.3 years ago by ★ 2.8k
1
vote
0
replies
7.1k
views
Comment: C: Find (Start:End) Positions That Sublists Occur Within A List . Python
updated 5.4 years ago by 45k • written 13.4 years ago by ★ 2.8k
39
votes
22
replies
30k
views
12 follow
Sift Or Polyphen
snp non mutation
updated 5.4 years ago by ★ 1.1k • written 14.1 years ago by ★ 2.8k
3
votes
1
reply
3.1k
views
Linking SNPs to DNA methylation calls
DNA-methylation SNP
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 2.8k
3
votes
0
replies
7.7k
views
Answer: A: How To Identify Isoforms Using Rna-Seq Data And How To Integrate Tf Binding With
updated 5.6 years ago by 45k • written 13.7 years ago by ★ 2.8k
0
votes
0
replies
10k
views
Comment: C: Peaks And Nearby Genes
updated 5.6 years ago by 45k • written 13.9 years ago by ★ 2.8k
1
vote
0
replies
13k
views
Comment: C: Nobel Prize And Bioinformatics
updated 5.6 years ago by 45k • written 14.1 years ago by ★ 2.8k
2
votes
3
replies
9.1k
views
Answer: A: Predicting Effect Of Single Mutation On Protein Structure
updated 5.6 years ago by 45k • written 14.1 years ago by ★ 2.8k
0
votes
0
replies
21k
views
Comment: C: How Do You Calculate If Two Sets Of Genomic Regions Overlap Significantly?
updated 5.6 years ago by 45k • written 13.7 years ago by ★ 2.8k
9
votes
17
replies
7.1k
views
Paired end peak callers
ChIP-Seq
updated 5.8 years ago by ▴ 50 • written 6.2 years ago by ★ 2.8k
7
votes
5
replies
4.1k
views
(Online) Courses In System Biology
written 12.1 years ago by ★ 2.8k
2
votes
3
replies
4.7k
views
Overlapping Peaks And Distance Between Them....
chip-seq
updated 5.9 years ago by 20 • written 13.9 years ago by ★ 2.8k
32
votes
19
replies
16k
views
8 follow
Statistical Measure Of Biological Significance For Overlapping Genomic Regions
statistics overlap
updated 2.3 years ago by 45k • written 13.9 years ago by ★ 2.8k
1
vote
1
reply
1.6k
views
Your favourite workflow for Hi-C data analysis (Plant Genome)
Hi-C
updated 6.0 years ago by 20 • written 6.1 years ago by ★ 2.8k
0
votes
1
reply
7.1k
views
Comment: C: Paired end peak callers
6.2 years ago by Dataminer ★ 2.8k
1
vote
1
reply
3.4k
views
Comment: C: Hi-C data alignment with star
6.3 years ago by Dataminer ★ 2.8k
5
votes
9
replies
3.4k
views
Hi-C data alignment with star
star hi-c
updated 6.3 years ago by ▴ 370 • written 6.3 years ago by ★ 2.8k
0
votes
1
reply
3.4k
views
Comment: C: Hi-C data alignment with star
6.3 years ago by Dataminer ★ 2.8k
0
votes
0
replies
3.4k
views
Comment: C: Hi-C data alignment with star
6.3 years ago by Dataminer ★ 2.8k
0
votes
0
replies
3.1k
views
creating loom files using loomR
loomR RNA-seq
6.4 years ago by Dataminer ★ 2.8k
-1
votes
18
replies
12k
views
Effective Genome Size In Macs [Hg19]
macs genomics
updated 6.6 years ago by ▴ 90 • written 12.5 years ago by ★ 2.8k
0
votes
1
reply
5.0k
views
Comment: C: BigWig from ensembl assembly to UCSC session
6.9 years ago by Dataminer ★ 2.8k
6
votes
16
replies
5.0k
views
BigWig from ensembl assembly to UCSC session
Bigwig UCSC ENSEMBL
updated 6.9 years ago by 105k • written 6.9 years ago by ★ 2.8k
0
votes
0
replies
5.0k
views
Comment: C: BigWig from ensembl assembly to UCSC session
6.9 years ago by Dataminer ★ 2.8k
0
votes
0
replies
5.0k
views
Comment: C: BigWig from ensembl assembly to UCSC session
6.9 years ago by Dataminer ★ 2.8k
1
vote
1
reply
5.0k
views
Comment: C: BigWig from ensembl assembly to UCSC session
6.9 years ago by Dataminer ★ 2.8k
0
votes
1
reply
5.0k
views
Comment: C: BigWig from ensembl assembly to UCSC session
6.9 years ago by Dataminer ★ 2.8k
3
votes
2
replies
2.7k
views
Creatig TrackHubs from BigWigs
trackHubs genome
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 2.8k
1
vote
0
replies
3.2k
views
Comment: C: heat map and Survival plot
6.9 years ago by Dataminer ★ 2.8k
5
votes
6
replies
3.2k
views
heat map and Survival plot
RNA-Seq Survival-plot K-M plot R
updated 6.9 years ago by 89k • written 6.9 years ago by ★ 2.8k
0
votes
0
replies
3.2k
views
Comment: C: heat map and Survival plot
6.9 years ago by Dataminer ★ 2.8k
319 results • Page 1 of 7
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