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Comment: Comment: sample-specific celltype in integrated data . Biology or batch effect ?
12 days ago by AB ▴ 360
0
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0
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356
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Comment: Comment: sample-specific celltype in integrated data . Biology or batch effect ?
12 days ago by AB ▴ 360
0
votes
1
reply
356
views
Comment: Comment: sample-specific celltype in integrated data . Biology or batch effect ?
12 days ago by AB ▴ 360
0
votes
6
replies
356
views
sample-specific celltype in integrated data . Biology or batch effect ?
single-cell seurat scRNAseq batch-effect
12 days ago by AB ▴ 360
0
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1
reply
526
views
Comment: Comment: Differential expression analysis between groups with varying cell proportions
4 weeks ago by AB ▴ 360
0
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2
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526
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Comment: Comment: Differential expression analysis between groups with varying cell proportions
4 weeks ago by AB ▴ 360
1
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9
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526
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Differential expression analysis between groups with varying cell proportions
scRNA-Seq Seurat Pseudobulk
updated 4 weeks ago by 5.9k • written 4 weeks ago by ▴ 360
0
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0
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469
views
Which are the best Cell - Cell communication packages for single cell RNASeq timeseries data?
R scrna seurat
2.2 years ago by AB ▴ 360
1
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0
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745
views
Answer: Answer: Identifying DEG's on Integrated samples
2.2 years ago by AB ▴ 360
7
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3
replies
3.0k
views
Extending and clipping bed files
ChIP-Seq bedtools
updated 2.7 years ago by • 0 • written 8.1 years ago by ▴ 360
0
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4
replies
3.1k
views
Database of mouse ligand receptors
ligand-receptor database mm9
updated 3.2 years ago by • 0 • written 7.2 years ago by ▴ 360
2
votes
1
reply
3.0k
views
results from SNPSift Concordance
SNPSift concordance snp
updated 3.3 years ago by • 0 • written 7.6 years ago by ▴ 360
1
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0
replies
2.9k
views
Answer: A: Error :[[<- defined for objects of type "S4" only for subclasses of environment
3.8 years ago by AB ▴ 360
1
vote
3
replies
2.9k
views
Error :[[<- defined for objects of type "S4" only for subclasses of environment - Shiny App error
shiny Seurat single cell RNASeq
3.8 years ago by AB ▴ 360
0
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0
replies
3.4k
views
Answer: A: Shiny board with seurat object
3.8 years ago by AB ▴ 360
0
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0
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2.9k
views
Comment: C: Error :[[<- defined for objects of type "S4" only for subclasses of environment
3.8 years ago by AB ▴ 360
3
votes
2
replies
5.5k
views
Error when using Bedtools fisher on sorted bed files
ChIP-Seq bedtools fisher test
updated 3.9 years ago by ▴ 160 • written 8.8 years ago by ▴ 360
1
vote
0
replies
1.3k
views
Comment: C: Aligning multiple runs using STARSolo
4.0 years ago by AB ▴ 360
3
votes
2
replies
1.3k
views
Aligning multiple runs using STARSolo
single cell RNASeq scRNA STARSolo STAR Alignment
updated 4.0 years ago by 85k • written 4.0 years ago by ▴ 360
0
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3
replies
1.9k
views
sratoolkit prefetch command returns no result
sratoolkit
updated 4.0 years ago by 85k • written 4.0 years ago by ▴ 360
0
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0
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1.9k
views
Answer: A: sratoolkit prefetch command returns no result
4.0 years ago by AB ▴ 360
0
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0
replies
1.9k
views
Comment: C: sratoolkit prefetch command returns no result
4.0 years ago by AB ▴ 360
2
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1
reply
4.4k
views
Downloading single cell RNASeq data using SRA
single-cell-RNASeq sratoolkit
updated 17 months ago by 44k • written 4.2 years ago by ▴ 360
0
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1
reply
1.1k
views
Identifying appearance or disappearance of cell populations between WT and Mut single cell RNA-Seq data
single cell RNA-Seq Seurat
updated 4.4 years ago by 13k • written 4.4 years ago by ▴ 360
0
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1
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3.6k
views
Comment: C: Differential binding analysis of motif-containing peaks
updated 4.9 years ago by 44k • written 8.8 years ago by ▴ 360
0
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0
replies
4.5k
views
Comment: C: Correcting batch effects between RPKM datasets?
updated 5.0 years ago by 44k • written 9.1 years ago by ▴ 360
0
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0
replies
21k
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Answer: A: Label Clusters in Seurat
5.3 years ago by AB ▴ 360
2
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0
replies
3.6k
views
Answer: A: Remove duplicate genes with lower significance in microarray data analysis
5.3 years ago by AB ▴ 360
1
vote
1
reply
3.9k
views
Answer: A: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
5.5 years ago by AB ▴ 360
2
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1
reply
1.8k
views
Answer: A: how to make input data R packge limma
5.5 years ago by AB ▴ 360
3
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3
replies
8.7k
views
Saving 3D plot from rgl as a pdf
rgl 3dplot
5.6 years ago by AB ▴ 360
1
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0
replies
8.7k
views
Answer: A: Saving 3D plot from rgl as a pdf
5.6 years ago by AB ▴ 360
3
votes
8
replies
12k
views
converting vcf to text file
vcf eqtl Matrix EQTL
updated 5.8 years ago by 20 • written 7.1 years ago by ▴ 360
0
votes
1
reply
1.5k
views
Count empty rows in Rhandsontable
rhandsontable shiny
6.1 years ago by AB ▴ 360
3
votes
6
replies
4.7k
views
Error while running pfamscan.pl : Unable to translate nucleotide sequences to protein sequences
RNA-Seq PfamScan lincRNA
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 360
0
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1
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4.7k
views
Comment: C: Error while running pfamscan.pl : Unable to translate nucleotide sequences to pr
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 360
0
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1
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4.7k
views
Comment: C: Error while running pfamscan.pl : Unable to translate nucleotide sequences to pr
updated 6.2 years ago by 44k • written 8.8 years ago by ▴ 360
0
votes
1
reply
1.4k
views
Error displaying GTEX like boxplot in UCSC Genome Browser - "Error creating boxplot from sample data"
ucsc genomebrowser boxplot GTEx Barcharts
6.2 years ago by AB ▴ 360
0
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0
replies
1.4k
views
Answer: C: Error displaying GTEX like boxplot in UCSC Genome Browser
6.2 years ago by AB ▴ 360
0
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0
replies
4.0k
views
Answer: A: how to do TSNEPlot which differentiate the sample and cluster at the same time i
6.2 years ago by AB ▴ 360
6
votes
0
replies
4.9k
views
Answer: A: Converting narrowpeak files to make it compatible with UCSC trackhub
updated 6.2 years ago by 147k • written 6.2 years ago by ▴ 360
8
votes
1
reply
4.9k
views
Converting narrowpeak files to make it compatible with UCSC trackhub
ucsc genomebrowser narrowpeakfile ucscutilites
6.2 years ago by AB ▴ 360
1
vote
2
replies
4.4k
views
Classify cells using seurat
scRNA seurat monocle
updated 6.4 years ago by ▴ 110 • written 6.8 years ago by ▴ 360
1
vote
0
replies
3.6k
views
Answer: A: KEGGREST: how to retrieve compound list by pathway ID
6.7 years ago by AB ▴ 360
0
votes
1
reply
2.5k
views
Answer: A: How to extract PRDM9 binding motifs in bed format?
6.7 years ago by AB ▴ 360
1
vote
0
replies
3.0k
views
Answer: A: Protein-protein Docking Software?
6.7 years ago by AB ▴ 360
6
votes
3
replies
5.8k
views
Log transformation of RPKM data for PCA analysis
RNA-Seq rpkm PCA log-transformation
updated 2.3 years ago by 44k • written 9.1 years ago by ▴ 360
2
votes
2
replies
5.0k
views
Vcf-compare two multi-sample vcf files
vcf-compare vcftools
updated 6.9 years ago by ▴ 10 • written 7.6 years ago by ▴ 360
0
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0
replies
12k
views
Answer: C: converting vcf to text file
7.1 years ago by AB ▴ 360
0
votes
2
replies
12k
views
Comment: C: converting vcf to text file
updated 7.1 years ago by 164k • written 7.1 years ago by ▴ 360
81 results • Page 1 of 2
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