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6
votes
6
replies
3.1k
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UCSC Fasta files by chromosome for rn6
ucsc fasta rn6
updated 7.1 years ago by ▴ 580 • written 7.1 years ago by ▴ 360
0
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0
replies
3.1k
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Comment: C: UCSC Fasta files by chromosome for rn6
7.1 years ago by AB ▴ 360
3
votes
3
replies
3.2k
views
running multiple RSeQC jobs
RNA-Seq RSeQC tin.py
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 360
1
vote
1
reply
5.9k
views
Comment: C: How to increase point size or color palette of a PCA plot using the scater packa
7.4 years ago by AB ▴ 360
2
votes
3
replies
5.9k
views
How to increase point size or color palette of a PCA plot using the scater package for scRNA analysis
scater plotPCA
7.4 years ago by AB ▴ 360
0
votes
0
replies
1.2k
views
Going from Snps to exons to protein domains
snps proteindomains variant Effect Predictor
7.6 years ago by AB ▴ 360
1
vote
1
reply
2.0k
views
Answer: A: NGS data analysis
7.6 years ago by AB ▴ 360
0
votes
2
replies
37k
views
"Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror" Error when installing package
R shiny-server
7.6 years ago by AB ▴ 360
0
votes
0
replies
37k
views
Answer: A: "Error in contrib.url(repos, type) : trying to use CRAN without setting a mirror
7.6 years ago by AB ▴ 360
0
votes
0
replies
2.7k
views
Answer: A: extract SNP, variants
7.6 years ago by AB ▴ 360
0
votes
1
reply
5.3k
views
Comment: A: Picard MergeSam error : Cannot use index file with textual SAM file
7.6 years ago by AB ▴ 360
2
votes
5
replies
5.3k
views
Picard MergeSam error : Cannot use index file with textual SAM file
picard mergesam
7.6 years ago by AB ▴ 360
0
votes
1
reply
5.3k
views
Comment: C: Picard MergeSam error : Cannot use index file with textual SAM file
7.6 years ago by AB ▴ 360
0
votes
0
replies
2.0k
views
Comment: C: bam-readcount : Reference_base is not the base with highest count
7.7 years ago by AB ▴ 360
4
votes
3
replies
2.0k
views
bam-readcount : Reference_base is not the base with highest count
bam-readcount
updated 7.7 years ago by 6.2k • written 7.7 years ago by ▴ 360
0
votes
0
replies
1.9k
views
Very high negative scores from bigWigAverageOverBed
ChIP-Seq bigWigAverageOverBed
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 360
0
votes
0
replies
3.2k
views
Comment: C: Finding distribution of indels from vcf file
8.1 years ago by AB ▴ 360
4
votes
2
replies
3.2k
views
Finding distribution of indels from vcf file
vcf samtools barplots
updated 8.1 years ago by ★ 3.8k • written 8.1 years ago by ▴ 360
0
votes
0
replies
1.9k
views
What is a good cutoff of mappability score from bigWigAverageOverBed ?
ChIP-Seq bigWigAverageOverBed
8.2 years ago by AB ▴ 360
0
votes
1
reply
3.3k
views
Comment: C: what do negative values from bigWigAverageOverBed output mean?
8.2 years ago by AB ▴ 360
2
votes
3
replies
3.3k
views
what do negative values from bigWigAverageOverBed output mean?
ChIP-Seq bigWigAverageOverBed deepTools
updated 8.2 years ago by 104k • written 8.2 years ago by ▴ 360
1
vote
1
reply
2.6k
views
Calculating FPKM of reads that overlap regions of interest
ChIP-Seq fpkm bedtools
8.3 years ago by AB ▴ 360
9
votes
2
replies
5.0k
views
MACS2 Peak Calling : Different number of peaks for each replicate
ChIP-Seq biological-replicates MACS2
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 360
0
votes
1
reply
1.8k
views
Finding out if non-coding transcripts from CPAT are tissue specific?
RNA-Seq CPAT lncRNA
updated 2.4 years ago by 44k • written 8.8 years ago by ▴ 360
3
votes
6
replies
3.6k
views
Differential binding analysis of motif-containing peaks
ChIP-Seq FIMO DiffBind
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 360
0
votes
0
replies
3.6k
views
Comment: A: Differential binding analysis of motif-containing peaks
8.8 years ago by AB ▴ 360
0
votes
0
replies
3.6k
views
Comment: C: Differential binding analysis of motif-containing peaks
8.8 years ago by AB ▴ 360
1
vote
3
replies
2.0k
views
Determine Condition using LogFC values
RNA-Seq fold-changes
updated 2.3 years ago by 44k • written 8.9 years ago by ▴ 360
0
votes
1
reply
3.3k
views
Removing batch effects from RPKM data
limma removeBatchEffect batch-effect rpkm
updated 7 months ago by 44k • written 9.1 years ago by ▴ 360
0
votes
1
reply
10k
views
Comment: C: PCA plot of RPKM data from RNA-Seq dataset
9.1 years ago by AB ▴ 360
13
votes
6
replies
10k
views
PCA plot of RPKM data from RNA-Seq dataset
RNA-Seq bioconductor pca rpkm
updated 9.1 years ago by ▴ 760 • written 9.1 years ago by ▴ 360
81 results • Page 2 of 2
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