Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
0
replies
611
views
Comment: Comment: Seeking chloroplast and mitochondrial reference for barley
3 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
824
views
Answer: Answer: Best way to assess relatedness of eukaryotic organisms from sequencing reads?
3 months ago by b.contreras.moreira ▴ 450
3
votes
0
replies
920
views
Answer: Answer: VCF filtering with Allele Balance (AB) using FilterVcf (Picard)
3 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
1.2k
views
Comment: Comment: Reverse Engineer a PWM from a logo?
5 months ago by b.contreras.moreira ▴ 450
3
votes
0
replies
790
views
Answer: Answer: Can different genes encode the same proteins?
5 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
1.1k
views
Comment: Comment: Can we construct single pangenome for different crops
6 months ago by b.contreras.moreira ▴ 450
4
votes
1
reply
1.1k
views
Answer: Answer: Can we construct single pangenome for different crops
6 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
878
views
Comment: Comment: Help with seqkit sort increasing file size in multifasta
6 months ago by b.contreras.moreira ▴ 450
1
vote
1
reply
878
views
Comment: Comment: Help with seqkit sort increasing file size in multifasta
6 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
1.2k
views
Comment: Comment: Basic de novo assembly of plant genome
7 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
474
views
Comment: Comment: Seeking Tool to Convert Chromosome Coordinates to cDNA Coordinates for Arabidops
7 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
471
views
Comment: Comment: Identify unique amino acids in a seuence of interest present in a MSA block
8 months ago by b.contreras.moreira ▴ 450
2
votes
1
reply
2.1k
views
Answer: Answer: comparison between a selected genes of a new strain and the same genes of the re
9 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
2.0k
views
Comment: Comment: What to consider Bit score or E value
9 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
665
views
Comment: Comment: How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using
10 months ago by b.contreras.moreira ▴ 450
1
vote
0
replies
804
views
Answer: Answer: Clusters of orthologous research tools
10 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
525
views
Answer: Answer: Allele frequency in gene sequence
11 months ago by b.contreras.moreira ▴ 450
1
vote
0
replies
524
views
Answer: Answer: Using SwissProt vs NR database for PSSM generation
11 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
1.1k
views
Comment: Comment: How to know protomter position in the chromosome?
12 months ago by b.contreras.moreira ▴ 450
2
votes
2
replies
1.1k
views
Answer: Answer: FASTQ header correction to remove .1 and .2 from paired end - SRA files
12 months ago by b.contreras.moreira ▴ 450
3
votes
1
reply
2.1k
views
Answer: Answer: NCBI vs Ensembl - Ortholog genes Information
12 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
826
views
Comment: Comment: perl Error - needLargeMem Bigwig
12 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
1.6k
views
Comment: Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
13 months ago by b.contreras.moreira ▴ 450
1
vote
1
reply
1.6k
views
Answer: Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
13 months ago by b.contreras.moreira ▴ 450
3
votes
0
replies
1.1k
views
Answer: Answer: TFs and Gene databases
13 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
4.0k
views
Answer: Answer: What purposes can TPM values be used for?
13 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
767
views
Answer: Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
13 months ago by b.contreras.moreira ▴ 450
1
vote
0
replies
717
views
Comment: Comment: How to calculate identity percentage between proteins contained in a FASTA file?
14 months ago by b.contreras.moreira ▴ 450
2
votes
1
reply
1.3k
views
Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
14 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
1.1k
views
Comment: Comment: Odd results with BLAST remote
14 months ago by b.contreras.moreira ▴ 450
2
votes
2
replies
1.1k
views
Answer: Answer: Odd results with BLAST remote
14 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
797
views
Answer: Answer: Beagle imputation
14 months ago by b.contreras.moreira ▴ 450
1
vote
0
replies
1.3k
views
Comment: Comment: NCBI MEGABLAST versus UCSC BLAT
14 months ago by b.contreras.moreira ▴ 450
1
vote
1
reply
1.3k
views
Answer: Answer: NCBI MEGABLAST versus UCSC BLAT
14 months ago by b.contreras.moreira ▴ 450
4
votes
2
replies
2.4k
views
Answer: Answer: How to BLAST more than 5 sequences against UniProt database?
14 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
14 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
14 months ago by b.contreras.moreira ▴ 450
1
vote
0
replies
1.7k
views
Comment: Comment: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
14 months ago by b.contreras.moreira ▴ 450
5
votes
2
replies
1.8k
views
Answer: Answer: Pan genome of plant
14 months ago by b.contreras.moreira ▴ 450
1
vote
1
reply
1.7k
views
Answer: Answer: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
14 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
15 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
15 months ago by b.contreras.moreira ▴ 450
2
votes
18
replies
3.1k
views
error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
14 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
15 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
15 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
15 months ago by b.contreras.moreira ▴ 450
0
votes
1
reply
3.1k
views
Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
15 months ago by b.contreras.moreira ▴ 450
1
vote
1
reply
560
views
adding new assemblies to previously built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
updated 15 months ago by ▴ 420 • written 15 months ago by ▴ 450
0
votes
0
replies
1.2k
views
Answer: Answer: converting VCF files to TSV file
15 months ago by b.contreras.moreira ▴ 450
0
votes
0
replies
1.9k
views
Answer: Answer: Intersect gene IDs list and GFF3 to get the annotation.
15 months ago by b.contreras.moreira ▴ 450
59 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6