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Comment: Comment: Help with seqkit sort increasing file size in multifasta
12 days ago by b.contreras.moreira ▴ 310
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335
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Comment: Comment: Help with seqkit sort increasing file size in multifasta
12 days ago by b.contreras.moreira ▴ 310
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1
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615
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Comment: Comment: Basic de novo assembly of plant genome
28 days ago by b.contreras.moreira ▴ 310
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276
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Comment: Comment: Seeking Tool to Convert Chromosome Coordinates to cDNA Coordinates for Arabidops
5 weeks ago by b.contreras.moreira ▴ 310
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285
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Comment: Comment: Identify unique amino acids in a seuence of interest present in a MSA block
9 weeks ago by b.contreras.moreira ▴ 310
2
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1
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1.1k
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Answer: Answer: comparison between a selected genes of a new strain and the same genes of the re
11 weeks ago by b.contreras.moreira ▴ 310
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0
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646
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Comment: Comment: What to consider Bit score or E value
3 months ago by b.contreras.moreira ▴ 310
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346
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Comment: Comment: How to Detect Amino Acid Changes from a GATK VCF File and Reference Genome Using
3 months ago by b.contreras.moreira ▴ 310
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0
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360
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Answer: Answer: Clusters of orthologous research tools
4 months ago by b.contreras.moreira ▴ 310
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0
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333
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Answer: Answer: Allele frequency in gene sequence
4 months ago by b.contreras.moreira ▴ 310
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295
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Answer: Answer: Using SwissProt vs NR database for PSSM generation
5 months ago by b.contreras.moreira ▴ 310
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639
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Comment: Comment: How to know protomter position in the chromosome?
6 months ago by b.contreras.moreira ▴ 310
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2
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579
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Answer: Answer: FASTQ header correction to remove .1 and .2 from paired end - SRA files
6 months ago by b.contreras.moreira ▴ 310
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1
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1.2k
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Answer: Answer: NCBI vs Ensembl - Ortholog genes Information
6 months ago by b.contreras.moreira ▴ 310
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1
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487
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Comment: Comment: perl Error - needLargeMem Bigwig
6 months ago by b.contreras.moreira ▴ 310
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1
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1.0k
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Comment: Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
6 months ago by b.contreras.moreira ▴ 310
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1
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1.0k
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Answer: Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
6 months ago by b.contreras.moreira ▴ 310
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0
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711
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Answer: Answer: TFs and Gene databases
7 months ago by b.contreras.moreira ▴ 310
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1.7k
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Answer: Answer: What purposes can TPM values be used for?
7 months ago by b.contreras.moreira ▴ 310
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0
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580
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Answer: Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in
7 months ago by b.contreras.moreira ▴ 310
1
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0
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495
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Comment: Comment: How to calculate identity percentage between proteins contained in a FASTA file?
7 months ago by b.contreras.moreira ▴ 310
2
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1
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1.0k
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Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
7 months ago by b.contreras.moreira ▴ 310
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0
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780
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Comment: Comment: Odd results with BLAST remote
7 months ago by b.contreras.moreira ▴ 310
2
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2
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780
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Answer: Answer: Odd results with BLAST remote
7 months ago by b.contreras.moreira ▴ 310
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1
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534
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Answer: Answer: Beagle imputation
7 months ago by b.contreras.moreira ▴ 310
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0
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974
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Comment: Comment: NCBI MEGABLAST versus UCSC BLAT
7 months ago by b.contreras.moreira ▴ 310
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1
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974
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Answer: Answer: NCBI MEGABLAST versus UCSC BLAT
7 months ago by b.contreras.moreira ▴ 310
4
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2
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1.4k
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Answer: Answer: How to BLAST more than 5 sequences against UniProt database?
8 months ago by b.contreras.moreira ▴ 310
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0
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
0
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1
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
1
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0
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1.1k
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Comment: Comment: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
8 months ago by b.contreras.moreira ▴ 310
5
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2
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1.1k
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Answer: Answer: Pan genome of plant
8 months ago by b.contreras.moreira ▴ 310
1
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1
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1.1k
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Answer: Answer: Should I use Dfam or a custom repetitve elements library (from PlantRep) as a re
8 months ago by b.contreras.moreira ▴ 310
0
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1
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
0
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1
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
2
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18
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2.3k
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error when running phg create-maf-vcf to build a built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
8 months ago by b.contreras.moreira ▴ 310
0
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1
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
0
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1
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
0
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1
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
0
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1
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2.3k
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Comment: Comment: error when running phg create-maf-vcf to build a built practical haplotype graph
8 months ago by b.contreras.moreira ▴ 310
1
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1
reply
374
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adding new assemblies to previously built practical haplotype graph (v2)
pangenome phg_v2 plants PHG
updated 8 months ago by ▴ 420 • written 8 months ago by ▴ 310
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660
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Answer: Answer: converting VCF files to TSV file
8 months ago by b.contreras.moreira ▴ 310
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0
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1.2k
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Answer: Answer: Intersect gene IDs list and GFF3 to get the annotation.
8 months ago by b.contreras.moreira ▴ 310
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1
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1.1k
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
8 months ago by b.contreras.moreira ▴ 310
0
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1
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1.1k
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
8 months ago by b.contreras.moreira ▴ 310
0
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1
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1.1k
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
8 months ago by b.contreras.moreira ▴ 310
3
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10
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1.1k
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Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
pangenome plants PHG
updated 8 months ago by ▴ 420 • written 8 months ago by ▴ 310
0
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1
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1.1k
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Comment: Comment: Errors running PHG MakeInitialPHGDBPipelinePlugin (**UNASSIGNED**)
8 months ago by b.contreras.moreira ▴ 310
0
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0
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1.3k
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Answer: Answer: Pan genome of genes
8 months ago by b.contreras.moreira ▴ 310
0
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0
replies
625
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Answer: Answer: Get_Homologues
8 months ago by b.contreras.moreira ▴ 310
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