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3
votes
2
replies
460
views
bamCoverage --MNase error : function a paired end library is required.
deeptools
updated 4 months ago by 147k • written 4 months ago by ▴ 120
1
vote
0
replies
460
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Comment: Comment: bamCoverage --MNase error : function a paired end library is required.
updated 4 months ago by 147k • written 4 months ago by ▴ 120
0
votes
3
replies
2.3k
views
Disappearing CB, the bam tag after samtools sort -t CB
sequencing Samtools RNA-Seq
updated 10 months ago by • 0 • written 4.1 years ago by ▴ 120
4
votes
7
replies
3.6k
views
Corrupted FASTq files with missing "+" under some sequences.
fastq RNAseq corruption recover
updated 14 months ago by • 0 • written 3.5 years ago by ▴ 120
0
votes
0
replies
1.4k
views
Answer: Answer: MiXCR error with the complied cat TCR library
21 months ago by akh22 ▴ 120
1
vote
2
replies
2.0k
views
MacStudio for Bioinformatics
Benchmark Impression Studio Mac
updated 2.7 years ago by 27k • written 2.7 years ago by ▴ 120
0
votes
2
replies
1.7k
views
Issue with Seurat SpatialPlot: spots not filling the whole tissue image
Seurat Tissue Transcriptomics 10xVisium
3.0 years ago by akh22 ▴ 120
0
votes
0
replies
1.7k
views
Answer: Answer: Issue with Seurat SpatialPlot: spots not filling the whole tissue image
3.0 years ago by akh22 ▴ 120
0
votes
0
replies
1.7k
views
Comment: Comment: Issue with Seurat SpatialPlot: spots not filling the whole tissue image
3.2 years ago by akh22 ▴ 120
0
votes
0
replies
2.3k
views
Comment: Comment: Disappearing CB, the bam tag after samtools sort -t CB
3.3 years ago by akh22 ▴ 120
0
votes
2
replies
3.6k
views
Comment: Comment: Corrupted FASTq files with missing "+" under some sequences.
3.5 years ago by akh22 ▴ 120
0
votes
1
reply
2.9k
views
Seurat obj conversion to Anndata not accurately creating var in a h5ad file
RNA-Seq R Seurat Anndata
3.5 years ago by akh22 ▴ 120
0
votes
0
replies
2.9k
views
Answer: Answer: Seurat obj conversion to Anndata not accurately creating var in a h5ad file
3.5 years ago by akh22 ▴ 120
0
votes
1
reply
1.7k
views
Comment: C: scRNA Cell Type ID web resources
3.8 years ago by akh22 ▴ 120
0
votes
1
reply
2.3k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
4.2 years ago by akh22 ▴ 120
0
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1
reply
2.3k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
4.2 years ago by akh22 ▴ 120
0
votes
1
reply
2.3k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
4.2 years ago by akh22 ▴ 120
0
votes
1
reply
2.3k
views
Comment: C: empty fastq files created by docker bcl2fastq2 v2.20 OSX
updated 4.2 years ago by 147k • written 4.2 years ago by ▴ 120
1
vote
9
replies
2.3k
views
empty fastq files created by docker bcl2fastq2 v2.20 OSX
RNA-Seq Assembly sequence next-gen
updated 3.0 years ago by ▴ 10 • written 4.2 years ago by ▴ 120
1
vote
0
replies
4.1k
views
Comment: C: Adjust for covariates
4.6 years ago by akh22 ▴ 120
0
votes
2
replies
3.2k
views
Amazon AWS setup for the bioinformatic analysis particularly scRNAseq
AWS Rstudio scRNAseq
updated 4.6 years ago by 88k • written 4.6 years ago by ▴ 120
0
votes
0
replies
1.9k
views
Comment: C: Getting a GTF of expressed repeat annotation from Ensembl
4.6 years ago by akh22 ▴ 120
1
vote
2
replies
1.9k
views
Getting a GTF of expressed repeat annotation from Ensembl
RNA-Seq sequence
4.6 years ago by akh22 ▴ 120
0
votes
1
reply
15k
views
Comment: C: How to adjust data for "continuous" covariates ?
4.7 years ago by akh22 ▴ 120
8
votes
1
reply
11k
views
Seurat3: RNA vs SCT assays for DotPlot
scRNAseq Seurat3
updated 5.2 years ago by ★ 18k • written 5.2 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Answer: A: Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensem
5.3 years ago by akh22 ▴ 120
1
vote
4
replies
2.3k
views
Sea of Ns in downloaded mm10 from NCBI and GRCm38.p6 primary sequence from Ensemble
RNA-Seq rna-seq Reference Genome
5.3 years ago by akh22 ▴ 120
0
votes
0
replies
952
views
Model Matrix Interacting model
RNA-Seq next-gen edgeR Model/Design Matrix
5.3 years ago by akh22 ▴ 120
0
votes
7
replies
5.0k
views
Loading 10x data into Monocle 3
RNA-Seq next-gen R Monocle3 10xdata
5.4 years ago by akh22 ▴ 120
0
votes
0
replies
5.0k
views
Answer: A: Loading 10x data into Monocle 3
5.4 years ago by akh22 ▴ 120
0
votes
0
replies
5.0k
views
Comment: C: Loading 10x data into Monocle 3
5.4 years ago by akh22 ▴ 120
0
votes
1
reply
5.0k
views
Comment: C: Loading 10x data into Monocle 3
5.4 years ago by akh22 ▴ 120
0
votes
1
reply
5.0k
views
Comment: C: Loading 10x data into Monocle 3
updated 5.4 years ago by 44k • written 5.4 years ago by ▴ 120
0
votes
0
replies
5.2k
views
Comment: C: Bioinformatics Workstation Suggestions
5.4 years ago by akh22 ▴ 120
11
votes
5
replies
5.2k
views
Forum: Bioinformatics Workstation Suggestions
RNA-Seq next-gen workstation
updated 18 months ago by 44k • written 5.4 years ago by ▴ 120
4
votes
5
replies
1.7k
views
scRNA Cell Type ID web resources
RNA-Seq next-gen scRNAseq
updated 5.4 years ago by ★ 18k • written 5.4 years ago by ▴ 120
2
votes
0
replies
3.9k
views
Answer: A: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
5.5 years ago by akh22 ▴ 120
3
votes
6
replies
3.9k
views
Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_id, instead of gene_id
RNA-Seq R assembly gene
5.5 years ago by akh22 ▴ 120
0
votes
0
replies
3.9k
views
Comment: C: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 120
0
votes
1
reply
3.9k
views
Comment: C: Why does Rsubread featureCounts with Ensemble GRCm38.96.GTF picks ensembl_exon_i
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 120
1
vote
0
replies
12k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by akh22 ▴ 120
0
votes
0
replies
12k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by akh22 ▴ 120
12
votes
10
replies
12k
views
converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with no luck
RNA-Seq R gene
updated 5.5 years ago by ▴ 260 • written 5.5 years ago by ▴ 120
0
votes
0
replies
12k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by akh22 ▴ 120
0
votes
0
replies
12k
views
Comment: C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
5.5 years ago by akh22 ▴ 120
0
votes
0
replies
2.8k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by akh22 ▴ 120
0
votes
1
reply
2.8k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by akh22 ▴ 120
0
votes
1
reply
2.8k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by akh22 ▴ 120
0
votes
0
replies
2.8k
views
Comment: C: Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
5.5 years ago by akh22 ▴ 120
0
votes
7
replies
2.8k
views
Rsubread featureCounts with built-in mm10 vs Ensemble GRCm38.96.gff3
RNA-Seq R assembly
5.5 years ago by akh22 ▴ 120
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