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2
votes
1
reply
2.2k
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Answer: A: Joining two files with multiple columns
updated 5.1 years ago by 44k • written 9.1 years ago by ★ 3.9k
1
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0
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6.9k
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Comment: C: How to confirm forward primer matches each read without removing primer sequence
updated 5.1 years ago by 44k • written 9.2 years ago by ★ 3.9k
2
votes
1
reply
32k
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Comment: C: getting intersect between two lists of genes in R
updated 5.1 years ago by 44k • written 9.2 years ago by ★ 3.9k
1
vote
1
reply
32k
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Comment: C: getting intersect between two lists of genes in R
updated 5.1 years ago by 44k • written 9.2 years ago by ★ 3.9k
1
vote
1
reply
32k
views
Comment: C: getting intersect between two lists of genes in R
updated 5.1 years ago by 44k • written 9.2 years ago by ★ 3.9k
0
votes
1
reply
4.4k
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Comment: C: Annotating RNA-Seq exon junctions
updated 5.1 years ago by 44k • written 9.2 years ago by ★ 3.9k
3
votes
1
reply
4.7k
views
Comment: C: Merge 2 files based on rs number but keep all info only from the first file
updated 5.1 years ago by 44k • written 9.2 years ago by ★ 3.9k
9
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1
reply
3.1k
views
Answer: A: Can FPKM be added?
updated 5.1 years ago by 44k • written 9.2 years ago by ★ 3.9k
3
votes
1
reply
2.4k
views
Answer: C: awk, copy and paste single line command
updated 5.1 years ago by 88k • written 5.2 years ago by ★ 3.9k
0
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0
replies
2.6k
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Comment: C: Nothing will align with HTSeq?
updated 5.1 years ago by 44k • written 9.3 years ago by ★ 3.9k
3
votes
1
reply
3.2k
views
Answer: A: error in getting sorted bam
updated 5.1 years ago by 44k • written 9.3 years ago by ★ 3.9k
2
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1
reply
7.7k
views
Comment: C: Using featureCount with a GFF file
5.1 years ago by michael.ante ★ 3.9k
1
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1
reply
7.7k
views
Comment: C: Using featureCount with a GFF file
5.1 years ago by michael.ante ★ 3.9k
0
votes
1
reply
7.6k
views
Comment: C: Removing barcode and adapters?
updated 5.1 years ago by 44k • written 9.4 years ago by ★ 3.9k
14
votes
5
replies
34k
views
Answer: A: Converstion of BED with scores into bigWig
updated 5.1 years ago by 44k • written 9.5 years ago by ★ 3.9k
0
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0
replies
8.7k
views
Comment: C: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
5.2 years ago by michael.ante ★ 3.9k
1
vote
0
replies
4.5k
views
Comment: C: salmon was only able to assign 0 fragments to transcripts
5.2 years ago by michael.ante ★ 3.9k
0
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1
reply
2.4k
views
Comment: C: awk, copy and paste single line command
5.2 years ago by michael.ante ★ 3.9k
1
vote
0
replies
3.7k
views
Comment: C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.2 years ago by michael.ante ★ 3.9k
0
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1
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3.7k
views
Comment: A: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.2 years ago by michael.ante ★ 3.9k
1
vote
1
reply
1.4k
views
Answer: A: Interpret genome alignment results
5.2 years ago by michael.ante ★ 3.9k
0
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0
replies
2.0k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.2 years ago by michael.ante ★ 3.9k
0
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1
reply
1.9k
views
Comment: C: can I use soft-clip RNA-seq reads to summarize gene counts?
5.2 years ago by michael.ante ★ 3.9k
2
votes
1
reply
2.6k
views
Comment: Comment: Which tool/method to use for Raw data quality evaluation and filtering
updated 2.8 years ago by 44k • written 10.0 years ago by ★ 3.9k
0
votes
0
replies
7.0k
views
Comment: C: Count matrix from bigwig files - Application
5.2 years ago by michael.ante ★ 3.9k
1
vote
0
replies
1.4k
views
Comment: C: How to calculate the number of functional proteins in GFF3 file
5.2 years ago by michael.ante ★ 3.9k
0
votes
1
reply
2.4k
views
Comment: C: STAR output soft-clipped reads instead of insertion
5.2 years ago by michael.ante ★ 3.9k
2
votes
1
reply
4.0k
views
Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
5.2 years ago by michael.ante ★ 3.9k
1
vote
1
reply
1.4k
views
Comment: C: How to calculate the number of functional proteins in GFF3 file
5.2 years ago by michael.ante ★ 3.9k
1
vote
0
replies
2.2k
views
Comment: C: Question about featureCounts
5.2 years ago by michael.ante ★ 3.9k
0
votes
0
replies
2.0k
views
Comment: C: Reverse Complement Reads in BAM File
5.2 years ago by michael.ante ★ 3.9k
1
vote
0
replies
2.0k
views
Comment: C: Stringtie and prepDE
5.2 years ago by michael.ante ★ 3.9k
0
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1
reply
2.3k
views
Comment: C: Clipping primer after alignment
5.3 years ago by michael.ante ★ 3.9k
0
votes
0
replies
4.6k
views
Answer: A: is 0-based start and 1-based end of bed format not compatible with htseq-count?
5.3 years ago by michael.ante ★ 3.9k
1
vote
0
replies
907
views
Comment: C: General guidance with project about gene duplication
5.3 years ago by michael.ante ★ 3.9k
1
vote
0
replies
1.2k
views
Comment: C: HT-seq-count default parameter to "score"secondary alignments contradicts its do
5.3 years ago by michael.ante ★ 3.9k
0
votes
0
replies
3.3k
views
Answer: A: sequence length distribution
5.3 years ago by michael.ante ★ 3.9k
0
votes
0
replies
1.1k
views
Answer: A: Bed file of union of all transcripts for a set of genes
5.3 years ago by michael.ante ★ 3.9k
1
vote
0
replies
2.2k
views
Answer: A: How to count total small RNAs (known and novel) in my aligned reads?
5.3 years ago by michael.ante ★ 3.9k
0
votes
1
reply
3.3k
views
Comment: C: Converting and sorting .sam at the same time
5.3 years ago by michael.ante ★ 3.9k
3
votes
1
reply
1.5k
views
Answer: A: BAM File size increased after extracting unique reads
5.4 years ago by michael.ante ★ 3.9k
0
votes
0
replies
1.2k
views
Answer: A: hisat2-build half done
5.6 years ago by michael.ante ★ 3.9k
1
vote
1
reply
34k
views
Comment: C: Converstion of BED with scores into bigWig
5.6 years ago by michael.ante ★ 3.9k
0
votes
2
replies
2.8k
views
Answer: A: mash configure error --with-gsl can not find gsl
updated 5.7 years ago by 148k • written 5.7 years ago by ★ 3.9k
0
votes
0
replies
2.8k
views
Comment: C: mash configure error --with-gsl can not find gsl
5.7 years ago by michael.ante ★ 3.9k
0
votes
0
replies
2.5k
views
Comment: C: General question about batch effect, read trimming and what to do when the adapt
5.7 years ago by michael.ante ★ 3.9k
0
votes
1
reply
2.5k
views
Comment: C: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
5.7 years ago by michael.ante ★ 3.9k
1
vote
1
reply
2.5k
views
Answer: A: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
5.7 years ago by michael.ante ★ 3.9k
0
votes
1
reply
5.5k
views
Comment: C: HTSeq & featureCounts show no features
5.7 years ago by michael.ante ★ 3.9k
0
votes
1
reply
5.5k
views
Comment: C: HTSeq & featureCounts show no features
5.8 years ago by michael.ante ★ 3.9k
435 results • Page 2 of 9
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