Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.0k
views
Comment: C: Error in piRNA gtf file while featurecounts step in STAR aligner?
5.3 years ago by michael.ante ★ 4.0k
0
votes
1
reply
2.0k
views
Comment: C: STAR error (segmentation fault) in Aligning reads
5.3 years ago by michael.ante ★ 4.0k
0
votes
2
replies
3.1k
views
Comment: C: FASTQ exctract ID's
5.3 years ago by michael.ante ★ 4.0k
1
vote
1
reply
2.0k
views
Comment: C: STAR error (segmentation fault) in Aligning reads
5.3 years ago by michael.ante ★ 4.0k
0
votes
1
reply
2.0k
views
Answer: A: Error in piRNA gtf file while featurecounts step in STAR aligner?
5.3 years ago by michael.ante ★ 4.0k
2
votes
1
reply
1.3k
views
Answer: C: Scaleable trimming of GenBank sequences?
5.3 years ago by michael.ante ★ 4.0k
0
votes
0
replies
1.2k
views
Comment: C: Data set containing corresponding RNA-seq and RT-Qpcr data
5.3 years ago by michael.ante ★ 4.0k
0
votes
0
replies
1.8k
views
Answer: A: Transcription factor target gene
5.3 years ago by michael.ante ★ 4.0k
0
votes
1
reply
3.3k
views
Comment: C: bash loop to count variants using vcftools
updated 5.3 years ago by 45k • written 9.3 years ago by ★ 4.0k
0
votes
0
replies
2.3k
views
Comment: C: RNA-SeQC v1.1.8 transcript_id attribute was not found
5.3 years ago by michael.ante ★ 4.0k
1
vote
1
reply
3.2k
views
Answer: A: two questions in loading data
updated 5.3 years ago by 45k • written 9.4 years ago by ★ 4.0k
0
votes
1
reply
2.6k
views
Answer: A: Tophat, low alignement left read
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 4.0k
2
votes
1
reply
2.3k
views
Answer: A: Joining two files with multiple columns
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 4.0k
1
vote
0
replies
7.2k
views
Comment: C: How to confirm forward primer matches each read without removing primer sequence
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 4.0k
2
votes
1
reply
33k
views
Comment: C: getting intersect between two lists of genes in R
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 4.0k
1
vote
1
reply
33k
views
Comment: C: getting intersect between two lists of genes in R
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 4.0k
1
vote
1
reply
33k
views
Comment: C: getting intersect between two lists of genes in R
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 4.0k
0
votes
1
reply
4.7k
views
Comment: C: Annotating RNA-Seq exon junctions
updated 5.4 years ago by 45k • written 9.5 years ago by ★ 4.0k
3
votes
1
reply
4.8k
views
Comment: C: Merge 2 files based on rs number but keep all info only from the first file
updated 5.4 years ago by 45k • written 9.5 years ago by ★ 4.0k
9
votes
1
reply
3.2k
views
Answer: A: Can FPKM be added?
updated 5.4 years ago by 45k • written 9.5 years ago by ★ 4.0k
3
votes
1
reply
2.6k
views
Answer: C: awk, copy and paste single line command
updated 5.4 years ago by 89k • written 5.4 years ago by ★ 4.0k
0
votes
0
replies
2.9k
views
Comment: C: Nothing will align with HTSeq?
updated 5.4 years ago by 45k • written 9.5 years ago by ★ 4.0k
3
votes
1
reply
3.3k
views
Answer: A: error in getting sorted bam
updated 5.4 years ago by 45k • written 9.6 years ago by ★ 4.0k
2
votes
1
reply
8.1k
views
Comment: C: Using featureCount with a GFF file
5.4 years ago by michael.ante ★ 4.0k
1
vote
1
reply
8.1k
views
Comment: C: Using featureCount with a GFF file
5.4 years ago by michael.ante ★ 4.0k
0
votes
1
reply
7.8k
views
Comment: C: Removing barcode and adapters?
updated 5.4 years ago by 45k • written 9.7 years ago by ★ 4.0k
14
votes
5
replies
35k
views
Answer: A: Converstion of BED with scores into bigWig
updated 5.4 years ago by 45k • written 9.7 years ago by ★ 4.0k
0
votes
0
replies
9.3k
views
Comment: C: Bedtools problem : It looks as though you have less than 3 columns at line: 1.
5.4 years ago by michael.ante ★ 4.0k
1
vote
0
replies
4.8k
views
Comment: C: salmon was only able to assign 0 fragments to transcripts
5.4 years ago by michael.ante ★ 4.0k
0
votes
1
reply
2.6k
views
Comment: C: awk, copy and paste single line command
5.4 years ago by michael.ante ★ 4.0k
1
vote
0
replies
3.9k
views
Comment: C: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.5 years ago by michael.ante ★ 4.0k
0
votes
1
reply
3.9k
views
Comment: A: bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
5.5 years ago by michael.ante ★ 4.0k
1
vote
1
reply
1.6k
views
Answer: A: Interpret genome alignment results
5.5 years ago by michael.ante ★ 4.0k
0
votes
0
replies
2.3k
views
Comment: C: Are reads with the same length and position always "duplicates"
5.5 years ago by michael.ante ★ 4.0k
0
votes
1
reply
2.0k
views
Comment: C: can I use soft-clip RNA-seq reads to summarize gene counts?
5.5 years ago by michael.ante ★ 4.0k
2
votes
1
reply
2.7k
views
Comment: Comment: Which tool/method to use for Raw data quality evaluation and filtering
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 4.0k
0
votes
0
replies
7.5k
views
Comment: C: Count matrix from bigwig files - Application
5.5 years ago by michael.ante ★ 4.0k
1
vote
0
replies
1.5k
views
Comment: C: How to calculate the number of functional proteins in GFF3 file
5.5 years ago by michael.ante ★ 4.0k
0
votes
1
reply
2.6k
views
Comment: C: STAR output soft-clipped reads instead of insertion
5.5 years ago by michael.ante ★ 4.0k
2
votes
1
reply
4.3k
views
Comment: C: STAR aligner maps 0 reads to multiple loci, but 3.7% to too many loci - meaning?
5.5 years ago by michael.ante ★ 4.0k
1
vote
1
reply
1.5k
views
Comment: C: How to calculate the number of functional proteins in GFF3 file
5.5 years ago by michael.ante ★ 4.0k
1
vote
0
replies
2.4k
views
Comment: C: Question about featureCounts
5.5 years ago by michael.ante ★ 4.0k
0
votes
0
replies
2.2k
views
Comment: C: Reverse Complement Reads in BAM File
5.5 years ago by michael.ante ★ 4.0k
1
vote
0
replies
2.1k
views
Comment: C: Stringtie and prepDE
5.5 years ago by michael.ante ★ 4.0k
0
votes
1
reply
2.5k
views
Comment: C: Clipping primer after alignment
5.5 years ago by michael.ante ★ 4.0k
0
votes
0
replies
5.2k
views
Answer: A: is 0-based start and 1-based end of bed format not compatible with htseq-count?
5.5 years ago by michael.ante ★ 4.0k
1
vote
0
replies
962
views
Comment: C: General guidance with project about gene duplication
5.5 years ago by michael.ante ★ 4.0k
1
vote
0
replies
1.3k
views
Comment: C: HT-seq-count default parameter to "score"secondary alignments contradicts its do
5.6 years ago by michael.ante ★ 4.0k
0
votes
0
replies
3.5k
views
Answer: A: sequence length distribution
5.6 years ago by michael.ante ★ 4.0k
0
votes
0
replies
1.2k
views
Answer: A: Bed file of union of all transcripts for a set of genes
5.6 years ago by michael.ante ★ 4.0k
447 results • Page 2 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6