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3
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Comment: A: BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
updated 6.0 years ago by 16k • written 6.0 years ago by ★ 3.9k
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Comment: C: STAR Splice Junctions normalization
6.0 years ago by michael.ante ★ 3.9k
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1
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3.7k
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Comment: C: STAR Splice Junctions normalization
6.0 years ago by michael.ante ★ 3.9k
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2.0k
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Comment: C: Terrible RNA mapping result by STAR
6.0 years ago by michael.ante ★ 3.9k
2
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1
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1.4k
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Answer: C: To find the genes encoding for Transcription factor in a given list
6.0 years ago by michael.ante ★ 3.9k
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3.5k
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Answer: C: umi_tools extract error: IndexError: string index out of range
6.0 years ago by michael.ante ★ 3.9k
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3.9k
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Comment: C: samtools: splitting a bam file putting all scaffolds together
6.1 years ago by michael.ante ★ 3.9k
3
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1
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6.1k
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Comment: C: How to remove singletons in a BAM file using samtools
6.1 years ago by michael.ante ★ 3.9k
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2.0k
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Comment: C: Add taxonomy information of fileA to species list in fileB
6.1 years ago by michael.ante ★ 3.9k
2
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2
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5.2k
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Answer: A: estimating read length and SD for Kallisto (single-end QuantSeq reads)
6.1 years ago by michael.ante ★ 3.9k
1
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7.7k
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Comment: C: RNA-seq mapping rate
6.1 years ago by michael.ante ★ 3.9k
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2.1k
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Answer: A: How to generate custom fasta and gtf files for RNA spike-ins
6.1 years ago by michael.ante ★ 3.9k
1
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7.5k
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Comment: C: Antisense transcription from strand specific RNA-seq
6.1 years ago by michael.ante ★ 3.9k
1
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3.9k
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Comment: C: how to extract counts from bam/merge-bam without gtf
6.1 years ago by michael.ante ★ 3.9k
0
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1.3k
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Comment: C: chimeric transcripts detection tool
6.1 years ago by michael.ante ★ 3.9k
1
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1
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3.9k
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Answer: A: how to extract counts from bam/merge-bam without gtf
6.1 years ago by michael.ante ★ 3.9k
0
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0
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5.9k
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Comment: C: % of reads unmapped: too short - STAR 2.5.2b
6.1 years ago by michael.ante ★ 3.9k
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5.6k
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Comment: C: cause of unmapped short with STAR
6.1 years ago by michael.ante ★ 3.9k
0
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0
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2.6k
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Comment: C: The same qvalues are reported to different pvalues
6.2 years ago by michael.ante ★ 3.9k
0
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1
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6.6k
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Comment: C: Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
6.2 years ago by michael.ante ★ 3.9k
1
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2.0k
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Comment: C: Faster way to get sequences from large fasta files?
6.2 years ago by michael.ante ★ 3.9k
0
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1
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6.6k
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Comment: C: Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
6.2 years ago by michael.ante ★ 3.9k
0
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6.5k
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Comment: C: How can I make a .bed file from my fasta?
6.2 years ago by michael.ante ★ 3.9k
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1.8k
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Comment: C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
6.2 years ago by michael.ante ★ 3.9k
1
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1
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1.8k
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Comment: C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
6.2 years ago by michael.ante ★ 3.9k
2
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0
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1.5k
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Answer: A: Extract sequence ID from Fasta for a given sequence
6.2 years ago by michael.ante ★ 3.9k
0
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0
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9.7k
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Comment: C: gff3 to bed12
6.2 years ago by michael.ante ★ 3.9k
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0
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9.7k
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Comment: C: gff3 to bed12
6.2 years ago by michael.ante ★ 3.9k
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2
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9.7k
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Comment: C: gff3 to bed12
6.2 years ago by michael.ante ★ 3.9k
1
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1
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9.7k
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Comment: C: gff3 to bed12
6.2 years ago by michael.ante ★ 3.9k
1
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1
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9.7k
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Comment: C: gff3 to bed12
6.2 years ago by michael.ante ★ 3.9k
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8.2k
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Comment: C: i cant sort bed file. Error in bedtools merge.
updated 6.3 years ago by 44k • written 8.8 years ago by ★ 3.9k
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3.2k
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Answer: A: Aligning reads to genome together with transcriptome
updated 6.3 years ago by 44k • written 8.8 years ago by ★ 3.9k
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1
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8.2k
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Comment: C: RPKM to FPKM conversion
updated 6.3 years ago by 44k • written 8.8 years ago by ★ 3.9k
2
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1
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8.2k
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Answer: A: RPKM to FPKM conversion
updated 6.3 years ago by 44k • written 8.8 years ago by ★ 3.9k
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0
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3.0k
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Comment: C: Good mean coverage but big std in coverage
6.3 years ago by michael.ante ★ 3.9k
2
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0
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3.0k
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Answer: A: Good mean coverage but big std in coverage
6.3 years ago by michael.ante ★ 3.9k
0
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0
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2.4k
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Comment: C: bedtools intersect issue
6.3 years ago by michael.ante ★ 3.9k
1
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0
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6.2k
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Answer: A: Post Your Prefered Bioinformatics Short Code
updated 6.3 years ago by 44k • written 9.7 years ago by ★ 3.9k
3
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1
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1.7k
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Answer: A: Extracting the sequence of isoforms from RNA-seq data
6.4 years ago by michael.ante ★ 3.9k
0
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2.0k
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Comment: C: Using HTseq-count for Pseudomonas Aeruginosa data
6.4 years ago by michael.ante ★ 3.9k
1
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0
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2.3k
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Comment: C: RNA-seq : Quantification problem after mapped with BBMap
6.4 years ago by michael.ante ★ 3.9k
1
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0
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2.0k
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Comment: C: Using HTseq-count for Pseudomonas Aeruginosa data
6.4 years ago by michael.ante ★ 3.9k
0
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1
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6.3k
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Comment: C: Convert gff3 to gtf with R or shell
6.4 years ago by michael.ante ★ 3.9k
2
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1
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4.0k
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Answer: A: Counting reads aligned to forward or reverse strand
6.4 years ago by michael.ante ★ 3.9k
0
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0
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3.5k
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Answer: A: comparing two files and adding columns of one file to another file if a fields i
6.4 years ago by michael.ante ★ 3.9k
1
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0
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4.2k
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Answer: A: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for w
6.4 years ago by michael.ante ★ 3.9k
1
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1
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2.3k
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Answer: A: RNA-seq : Quantification problem after mapped with BBMap
6.4 years ago by michael.ante ★ 3.9k
0
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0
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1.7k
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Answer: A: Create an assembly with a ribosomic chromosome
6.4 years ago by michael.ante ★ 3.9k
1
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1
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7.7k
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Comment: C: Building STAR genome index continually killed
6.4 years ago by michael.ante ★ 3.9k
435 results • Page 4 of 9
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