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Comment: C: Fields with biggest demand for bioinformatics?
6.2 years ago by michael.ante ★ 4.0k
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1
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4.0k
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Comment: C: Problem in running STAR
6.2 years ago by michael.ante ★ 4.0k
1
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1
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4.0k
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Comment: C: Problem in running STAR
6.2 years ago by michael.ante ★ 4.0k
1
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2
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5.0k
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Comment: C: Finding out assembly reference from bam file
6.2 years ago by michael.ante ★ 4.0k
3
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1
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5.0k
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Comment: C: Finding out assembly reference from bam file
6.2 years ago by michael.ante ★ 4.0k
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3.2k
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Comment: C: Will the --outfiltermismatchNmax in the STAR works for the single end reads?
6.2 years ago by michael.ante ★ 4.0k
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1
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4.6k
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Comment: C: IGV ignoring indexed and sorted .bai file and trying to create a .fai file to vi
6.3 years ago by michael.ante ★ 4.0k
1
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0
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3.6k
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Answer: A: Infer experiment - Failed to determine strandin paired end stranded RNA-seq
6.3 years ago by michael.ante ★ 4.0k
1
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0
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3.5k
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Comment: C: BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
6.3 years ago by michael.ante ★ 4.0k
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1
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4.2k
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Comment: C: STAR Splice Junctions normalization
6.3 years ago by michael.ante ★ 4.0k
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1
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4.2k
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Comment: C: STAR Splice Junctions normalization
6.3 years ago by michael.ante ★ 4.0k
1
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1
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4.2k
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Comment: C: STAR Splice Junctions normalization
6.3 years ago by michael.ante ★ 4.0k
3
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3.5k
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Comment: A: BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
updated 6.3 years ago by 16k • written 6.3 years ago by ★ 4.0k
1
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1
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4.2k
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Comment: C: STAR Splice Junctions normalization
6.3 years ago by michael.ante ★ 4.0k
0
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1
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4.2k
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Comment: C: STAR Splice Junctions normalization
6.3 years ago by michael.ante ★ 4.0k
1
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0
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2.1k
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Comment: C: Terrible RNA mapping result by STAR
6.3 years ago by michael.ante ★ 4.0k
2
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1
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1.5k
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Answer: C: To find the genes encoding for Transcription factor in a given list
6.3 years ago by michael.ante ★ 4.0k
1
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1
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3.6k
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Answer: C: umi_tools extract error: IndexError: string index out of range
6.3 years ago by michael.ante ★ 4.0k
0
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0
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4.2k
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Comment: C: samtools: splitting a bam file putting all scaffolds together
6.4 years ago by michael.ante ★ 4.0k
3
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1
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6.4k
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Comment: C: How to remove singletons in a BAM file using samtools
6.4 years ago by michael.ante ★ 4.0k
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0
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2.2k
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Comment: C: Add taxonomy information of fileA to species list in fileB
6.4 years ago by michael.ante ★ 4.0k
2
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2
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5.5k
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Answer: A: estimating read length and SD for Kallisto (single-end QuantSeq reads)
6.4 years ago by michael.ante ★ 4.0k
1
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0
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8.1k
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Comment: C: RNA-seq mapping rate
6.4 years ago by michael.ante ★ 4.0k
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0
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2.3k
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Answer: A: How to generate custom fasta and gtf files for RNA spike-ins
6.4 years ago by michael.ante ★ 4.0k
1
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0
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8.1k
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Comment: C: Antisense transcription from strand specific RNA-seq
6.4 years ago by michael.ante ★ 4.0k
1
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0
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4.1k
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Comment: C: how to extract counts from bam/merge-bam without gtf
6.4 years ago by michael.ante ★ 4.0k
0
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0
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1.4k
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Comment: C: chimeric transcripts detection tool
6.4 years ago by michael.ante ★ 4.0k
1
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1
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4.1k
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Answer: A: how to extract counts from bam/merge-bam without gtf
6.4 years ago by michael.ante ★ 4.0k
0
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0
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6.1k
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Comment: C: % of reads unmapped: too short - STAR 2.5.2b
6.4 years ago by michael.ante ★ 4.0k
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0
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5.8k
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Comment: C: cause of unmapped short with STAR
6.5 years ago by michael.ante ★ 4.0k
0
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0
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2.9k
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Comment: C: The same qvalues are reported to different pvalues
6.5 years ago by michael.ante ★ 4.0k
0
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1
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7.0k
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Comment: C: Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
6.5 years ago by michael.ante ★ 4.0k
1
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0
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2.2k
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Comment: C: Faster way to get sequences from large fasta files?
6.5 years ago by michael.ante ★ 4.0k
0
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1
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7.0k
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Comment: C: Can one use STAR (splice-aware) to align genomic DNA (non-spliced)
6.5 years ago by michael.ante ★ 4.0k
0
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0
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7.0k
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Comment: C: How can I make a .bed file from my fasta?
6.5 years ago by michael.ante ★ 4.0k
0
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0
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2.0k
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Comment: C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
6.5 years ago by michael.ante ★ 4.0k
1
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1
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2.0k
views
Comment: C: Genome-aligned RNA-Seq: one treatment showing high% of unmapped reads:too short
6.5 years ago by michael.ante ★ 4.0k
2
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0
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1.6k
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Answer: A: Extract sequence ID from Fasta for a given sequence
6.5 years ago by michael.ante ★ 4.0k
0
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0
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10k
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Comment: C: gff3 to bed12
6.5 years ago by michael.ante ★ 4.0k
0
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0
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10k
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Comment: C: gff3 to bed12
6.5 years ago by michael.ante ★ 4.0k
0
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2
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10k
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Comment: C: gff3 to bed12
6.5 years ago by michael.ante ★ 4.0k
1
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1
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10k
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Comment: C: gff3 to bed12
6.5 years ago by michael.ante ★ 4.0k
1
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1
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10k
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Comment: C: gff3 to bed12
6.5 years ago by michael.ante ★ 4.0k
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0
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8.6k
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Comment: C: i cant sort bed file. Error in bedtools merge.
updated 6.6 years ago by 45k • written 9.2 years ago by ★ 4.0k
0
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0
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3.4k
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Answer: A: Aligning reads to genome together with transcriptome
updated 6.6 years ago by 45k • written 9.2 years ago by ★ 4.0k
0
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1
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8.4k
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Comment: C: RPKM to FPKM conversion
updated 6.6 years ago by 45k • written 9.1 years ago by ★ 4.0k
2
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1
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8.4k
views
Answer: A: RPKM to FPKM conversion
updated 6.6 years ago by 45k • written 9.1 years ago by ★ 4.0k
0
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0
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3.4k
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Comment: C: Good mean coverage but big std in coverage
6.6 years ago by michael.ante ★ 4.0k
2
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0
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3.4k
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Answer: A: Good mean coverage but big std in coverage
6.6 years ago by michael.ante ★ 4.0k
0
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0
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2.6k
views
Comment: C: bedtools intersect issue
6.6 years ago by michael.ante ★ 4.0k
447 results • Page 4 of 9
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