Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.6k
views
Comment: C: How to obtain the non-redundant total size of the GRCh38 genome?
8.0 years ago by michael.ante ★ 3.9k
0
votes
0
replies
2.6k
views
Answer: A: High number of no feature while using htseq-count on Tophat2 aligned as well as
8.0 years ago by michael.ante ★ 3.9k
3
votes
0
replies
14k
views
Answer: A: FASTA sequence sorting based on the header
8.1 years ago by michael.ante ★ 3.9k
1
vote
0
replies
2.2k
views
Answer: A: Check my work? Hyper geometric test on enrichment between iCLIP sites across exp
8.1 years ago by michael.ante ★ 3.9k
0
votes
0
replies
2.0k
views
Answer: A: GFF/GTF for small ncRNAs
8.1 years ago by michael.ante ★ 3.9k
1
vote
0
replies
5.3k
views
Answer: A: htseq counts on genes (introns + exons)
8.1 years ago by michael.ante ★ 3.9k
0
votes
2
replies
1.2k
views
Answer: A: The meaning of SCRIPTURE output file, *.segments
8.1 years ago by michael.ante ★ 3.9k
2
votes
0
replies
1.9k
views
Answer: A: tab-delimited file - use in bedtools?
8.1 years ago by michael.ante ★ 3.9k
0
votes
1
reply
2.0k
views
Comment: C: Disadvantages Eukaryotes rna seq pipeline about bacteria
8.1 years ago by michael.ante ★ 3.9k
1
vote
1
reply
2.0k
views
Answer: A: Disadvantages Eukaryotes rna seq pipeline about bacteria
8.1 years ago by michael.ante ★ 3.9k
1
vote
1
reply
7.2k
views
Comment: C: HTSeq error when reading BAM file
8.3 years ago by michael.ante ★ 3.9k
0
votes
1
reply
7.2k
views
Comment: C: HTSeq error when reading BAM file
8.3 years ago by michael.ante ★ 3.9k
3
votes
1
reply
7.2k
views
Comment: C: HTSeq error when reading BAM file
8.3 years ago by michael.ante ★ 3.9k
2
votes
1
reply
7.2k
views
Answer: A: HTSeq error when reading BAM file
8.3 years ago by michael.ante ★ 3.9k
1
vote
1
reply
6.5k
views
Comment: C: How to compute RNA-Seq mapping stats for rRNAs?
8.3 years ago by michael.ante ★ 3.9k
1
vote
0
replies
7.4k
views
Answer: A: Where can I find a small NGS raw data set?
8.3 years ago by michael.ante ★ 3.9k
0
votes
0
replies
3.9k
views
Answer: A: Use Bedtools to extract stranded read depth from BAM files
8.3 years ago by michael.ante ★ 3.9k
0
votes
1
reply
5.9k
views
Comment: C: Cufflinks- found spliced alignment without XS attribute
8.3 years ago by michael.ante ★ 3.9k
1
vote
1
reply
5.9k
views
Answer: A: Cufflinks- found spliced alignment without XS attribute
8.3 years ago by michael.ante ★ 3.9k
0
votes
1
reply
4.6k
views
Answer: A: Extract intergenic coordinate from gff
8.4 years ago by michael.ante ★ 3.9k
0
votes
0
replies
5.5k
views
Comment: C: High number of no feature while using htseq-count on Tophat2 aligned as well as
8.5 years ago by michael.ante ★ 3.9k
1
vote
0
replies
7.5k
views
Answer: A: Run htseq-count with multiple sam files?
8.5 years ago by michael.ante ★ 3.9k
1
vote
0
replies
5.5k
views
Comment: C: High number of no feature while using htseq-count on Tophat2 aligned as well as
8.5 years ago by michael.ante ★ 3.9k
1
vote
1
reply
5.5k
views
Answer: A: High number of no feature while using htseq-count on Tophat2 aligned as well as
8.5 years ago by michael.ante ★ 3.9k
1
vote
1
reply
5.5k
views
Answer: A: High number of no feature while using htseq-count on Tophat2 aligned as well as
8.5 years ago by michael.ante ★ 3.9k
1
vote
1
reply
2.0k
views
Answer: A: Generate bed co-ordinates other then given inout bed file
8.6 years ago by michael.ante ★ 3.9k
2
votes
1
reply
3.7k
views
Comment: C: Does better results in HTSeq-Count mean that the script was run correctly?
8.6 years ago by michael.ante ★ 3.9k
0
votes
1
reply
3.7k
views
Comment: C: Read counts based on genes from samtools, feature count and htseq-count
8.6 years ago by michael.ante ★ 3.9k
1
vote
1
reply
5.4k
views
Comment: C: Improving alignment rates for RNA-seq
8.6 years ago by michael.ante ★ 3.9k
0
votes
1
reply
1.4k
views
Comment: C: raw data origine
8.6 years ago by michael.ante ★ 3.9k
3
votes
1
reply
5.4k
views
Answer: A: Improving alignment rates for RNA-seq
8.6 years ago by michael.ante ★ 3.9k
3
votes
1
reply
4.0k
views
Answer: A: HTSeq with transcriptome alignment- finding the right gtf
8.6 years ago by michael.ante ★ 3.9k
1
vote
0
replies
2.6k
views
Comment: C: problem with using gtf file in cufflinks in Galaxy
8.6 years ago by michael.ante ★ 3.9k
0
votes
1
reply
2.6k
views
Answer: A: problem with using gtf file in cufflinks in Galaxy
8.6 years ago by michael.ante ★ 3.9k
1
vote
0
replies
2.2k
views
Answer: A: bed file conversion and comparing with the genome to find its region
8.6 years ago by michael.ante ★ 3.9k
0
votes
1
reply
1.4k
views
Answer: A: raw data origine
8.6 years ago by michael.ante ★ 3.9k
1
vote
0
replies
6.9k
views
Answer: A: calculate FPKM/RPKM values by user friendly software
8.6 years ago by michael.ante ★ 3.9k
0
votes
0
replies
8.7k
views
Comment: C: Extracting last N bases of reads in FASTQ file
8.7 years ago by michael.ante ★ 3.9k
0
votes
1
reply
14k
views
Comment: C: How to use TPM from RNA seq data analysis for differential gene expression analy
8.7 years ago by michael.ante ★ 3.9k
2
votes
1
reply
8.7k
views
Answer: A: Extracting last N bases of reads in FASTQ file
8.7 years ago by michael.ante ★ 3.9k
1
vote
2
replies
12k
views
Comment: C: How can we extract these genes from VCF file?
8.7 years ago by michael.ante ★ 3.9k
3
votes
1
reply
12k
views
Answer: A: How can we extract these genes from VCF file?
8.7 years ago by michael.ante ★ 3.9k
1
vote
1
reply
3.3k
views
Comment: C: How to extract upper/lowercase from fasta to output position and +/-
8.7 years ago by michael.ante ★ 3.9k
2
votes
0
replies
3.3k
views
Answer: A: How to extract upper/lowercase from fasta to output position and +/-
8.7 years ago by michael.ante ★ 3.9k
1
vote
0
replies
14k
views
Comment: C: BAM header file error
8.7 years ago by michael.ante ★ 3.9k
1
vote
0
replies
1.9k
views
Answer: A: Where to find Bioinformatics datasets for the purpose of visualization
8.7 years ago by michael.ante ★ 3.9k
0
votes
1
reply
1.9k
views
Comment: C: Where to find Bioinformatics datasets for the purpose of visualization
8.7 years ago by michael.ante ★ 3.9k
1
vote
1
reply
6.8k
views
Answer: A: rename reads in fastq files
8.7 years ago by michael.ante ★ 3.9k
4
votes
0
replies
2.5k
views
Answer: A: Incompatibility between bbmap and htseq?
8.7 years ago by michael.ante ★ 3.9k
0
votes
0
replies
2.0k
views
Answer: A: whole genome fasta/gtf for cell lines
8.7 years ago by michael.ante ★ 3.9k
435 results • Page 7 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6