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7
votes
11
replies
4.1k
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What is the appropriate approach for ChIPseq protein genome occupancy % calculation?
ChIP-Seq
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Answer: A: What do you want to learn about bioinformatics?
4.8 years ago by AlexAbdulkaderKheirallah ▴ 120
1
vote
4
replies
2.3k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 2.1 years ago by 45k • written 6.5 years ago by ▴ 120
0
votes
0
replies
24k
views
Comment: C: What'S The Best Way To View And Explore A Large Gene Ontology Dag?
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Comment: C: What do you want to learn about bioinformatics?
6.5 years ago by AlexAbdulkaderKheirallah ▴ 120
16
votes
3
replies
10.0k
views
How is FDR calculated in MACS?
ChIP-Seq
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
16
votes
5
replies
9.6k
views
Scatter plot for GSEA results analysis
RNA-Seq
updated 8.9 years ago by ▴ 120 • written 9.6 years ago by ▴ 120
0
votes
0
replies
11k
views
Answer: A: Download all eQTL data for all the 9 tissues from GTEx Portal
9.3 years ago by AlexAbdulkaderKheirallah ▴ 120
1
vote
3
replies
2.3k
views
What are the GRCh37/38 tRNA gene names
gene
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 120
0
votes
1
reply
19k
views
Comment: Comment: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
updated 2.7 years ago by 45k • written 9.9 years ago by ▴ 120
0
votes
0
replies
3.5k
views
Comment: Comment: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 120
2
votes
3
replies
3.5k
views
How to test statistical significance of ChIPseq enrichment in custom BED regions?
ChIP-Seq
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 120
0
votes
0
replies
3.8k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 120
0
votes
1
reply
3.8k
views
Comment: C: Meaning of differential promoter use (cuffdiff)
9.9 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
3.8k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 120
1
vote
3
replies
2.0k
views
QC of ChIPseq data (controlling false negatives)
ChIP-Seq qc
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 120
0
votes
1
reply
3.8k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 120
0
votes
7
replies
3.8k
views
Meaning of differential promoter use (cuffdiff)
RNA-Seq
updated 2.6 years ago by 45k • written 9.9 years ago by ▴ 120
0
votes
0
replies
2.0k
views
Comment: C: QC of ChIPseq data (controlling false negatives)
9.9 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
1
reply
4.1k
views
Comment: Comment: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
1
reply
4.1k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
10.0 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
4.1k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
10.0 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
1
reply
4.1k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
10.0 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
3.7k
views
Comment: Comment: Fundamental flaw in ngs.plot - how to overcome?C
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
0
replies
5.4k
views
Comment: A: Chip-Seq Enrichment Profile Significance?
10.0 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
3.7k
views
Answer: Answer: Fundamental flaw in ngs.plot - how to overcome?C
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
3
votes
5
replies
3.7k
views
Fundamental flaw in ngs.plot - how to overcome?C
ChIP-Seq
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
0
replies
2.4k
views
Comment: A: How to retrive the number of reads aligned to various genomic features?
updated 10.0 years ago by 11k • written 10.0 years ago by ▴ 120
0
votes
0
replies
2.3k
views
Comment: Comment: Is it necessery to use GTF annotation exlusively for mRNA if sequencing library
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
3
votes
3
replies
2.4k
views
How to retrive the number of reads aligned to various genomic features?
ChIP-Seq
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
1
reply
2.3k
views
Comment: Comment: Is it necessery to use GTF annotation exlusively for mRNA if sequencing library
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
2
votes
4
replies
2.3k
views
Is it necessery to use GTF annotation exlusively for mRNA if sequencing library is mRNA enriched?
RNA-Seq
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
0
replies
2.4k
views
Comment: C: How to retrive the number of reads aligned to various genomic features?
10.0 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
10.0k
views
Comment: Comment: How is FDR calculated in MACS?
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 120
1
vote
2
replies
3.7k
views
Read alignment for ChIPseq
ChIP-Seq alignment
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 120
0
votes
1
reply
2.3k
views
Comment: Comment: What are the GRCh37/38 tRNA gene names
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 120
0
votes
0
replies
2.1k
views
Comment: C: Isoform transcript sequence reconstruction
10.3 years ago by AlexAbdulkaderKheirallah ▴ 120
3
votes
2
replies
2.1k
views
Isoform transcript sequence reconstruction
RNA-Seq sequence
updated 10.3 years ago by 105k • written 10.3 years ago by ▴ 120
0
votes
1
reply
9.5k
views
Comment: C: GSEA matrix error appears during analysis
updated 10.5 years ago by 45k • written 10.5 years ago by ▴ 120
0
votes
6
replies
9.5k
views
GSEA matrix error appears during analysis
software-error RNA-Seq
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 120
1
vote
3
replies
3.1k
views
Question about the appropriate FPKM gene expression processing
RNA-Seq
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 120
0
votes
0
replies
3.1k
views
Comment: Comment: Question about the appropriate FPKM gene expression processing
updated 3.3 years ago by 45k • written 10.5 years ago by ▴ 120
0
votes
0
replies
9.5k
views
Comment: C: GSEA matrix error appears during analysis
10.5 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
9.5k
views
Comment: C: GSEA matrix error appears during analysis
10.5 years ago by AlexAbdulkaderKheirallah ▴ 120
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