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7
votes
11
replies
3.6k
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What is the appropriate approach for ChIPseq protein genome occupancy % calculation?
ChIP-Seq
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
0
replies
2.0k
views
Answer: A: What do you want to learn about bioinformatics?
4.3 years ago by AlexAbdulkaderKheirallah ▴ 120
1
vote
4
replies
2.0k
views
Forum: What do you want to learn about bioinformatics?
course education
updated 18 months ago by 44k • written 5.9 years ago by ▴ 120
0
votes
0
replies
23k
views
Comment: C: What'S The Best Way To View And Explore A Large Gene Ontology Dag?
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 120
0
votes
0
replies
2.0k
views
Comment: C: What do you want to learn about bioinformatics?
5.9 years ago by AlexAbdulkaderKheirallah ▴ 120
16
votes
3
replies
9.6k
views
How is FDR calculated in MACS?
ChIP-Seq
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
16
votes
5
replies
9.1k
views
Scatter plot for GSEA results analysis
RNA-Seq
updated 8.4 years ago by ▴ 120 • written 9.0 years ago by ▴ 120
0
votes
0
replies
10k
views
Answer: A: Download all eQTL data for all the 9 tissues from GTEx Portal
8.7 years ago by AlexAbdulkaderKheirallah ▴ 120
1
vote
3
replies
2.2k
views
What are the GRCh37/38 tRNA gene names
gene
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 120
0
votes
1
reply
18k
views
Comment: Comment: Сalculating fold-enrichment of ChIP-seq peaks intersecting with promoters (vs. g
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 120
0
votes
0
replies
3.3k
views
Comment: Comment: How to test statistical significance of ChIPseq enrichment in custom BED regions
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 120
2
votes
3
replies
3.3k
views
How to test statistical significance of ChIPseq enrichment in custom BED regions?
ChIP-Seq
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 120
0
votes
0
replies
3.5k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 120
0
votes
1
reply
3.5k
views
Comment: C: Meaning of differential promoter use (cuffdiff)
9.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
3.5k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 120
1
vote
3
replies
1.8k
views
QC of ChIPseq data (controlling false negatives)
ChIP-Seq qc
updated 24 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
1
reply
3.5k
views
Comment: Comment: Meaning of differential promoter use (cuffdiff)
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 120
0
votes
7
replies
3.5k
views
Meaning of differential promoter use (cuffdiff)
RNA-Seq
updated 2.1 years ago by 44k • written 9.4 years ago by ▴ 120
0
votes
0
replies
1.8k
views
Comment: C: QC of ChIPseq data (controlling false negatives)
9.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
1
reply
3.6k
views
Comment: Comment: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
1
reply
3.6k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
9.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
3.6k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
9.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
1
reply
3.6k
views
Comment: C: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
9.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
3.5k
views
Comment: Comment: Fundamental flaw in ngs.plot - how to overcome?C
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
0
replies
5.0k
views
Comment: A: Chip-Seq Enrichment Profile Significance?
9.4 years ago by AlexAbdulkaderKheirallah ▴ 120
3
votes
5
replies
3.5k
views
Fundamental flaw in ngs.plot - how to overcome?C
ChIP-Seq
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
0
replies
3.5k
views
Answer: Answer: Fundamental flaw in ngs.plot - how to overcome?C
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: A: How to retrive the number of reads aligned to various genomic features?
updated 9.4 years ago by 11k • written 9.4 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: Comment: Is it necessery to use GTF annotation exlusively for mRNA if sequencing library
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
3
votes
3
replies
2.2k
views
How to retrive the number of reads aligned to various genomic features?
ChIP-Seq
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
1
reply
2.2k
views
Comment: Comment: Is it necessery to use GTF annotation exlusively for mRNA if sequencing library
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
2
votes
4
replies
2.2k
views
Is it necessery to use GTF annotation exlusively for mRNA if sequencing library is mRNA enriched?
RNA-Seq
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: How to retrive the number of reads aligned to various genomic features?
9.4 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
9.6k
views
Comment: Comment: How is FDR calculated in MACS?
updated 23 months ago by 44k • written 9.4 years ago by ▴ 120
1
vote
2
replies
3.6k
views
Read alignment for ChIPseq
ChIP-Seq alignment
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 120
0
votes
1
reply
2.2k
views
Comment: Comment: What are the GRCh37/38 tRNA gene names
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 120
0
votes
0
replies
1.9k
views
Comment: C: Isoform transcript sequence reconstruction
9.7 years ago by AlexAbdulkaderKheirallah ▴ 120
3
votes
2
replies
1.9k
views
Isoform transcript sequence reconstruction
RNA-Seq sequence
updated 9.7 years ago by 104k • written 9.7 years ago by ▴ 120
0
votes
1
reply
9.1k
views
Comment: C: GSEA matrix error appears during analysis
updated 9.9 years ago by 44k • written 10.0 years ago by ▴ 120
0
votes
6
replies
9.1k
views
GSEA matrix error appears during analysis
software-error RNA-Seq
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 120
1
vote
3
replies
2.9k
views
Question about the appropriate FPKM gene expression processing
RNA-Seq
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 120
0
votes
0
replies
2.9k
views
Comment: Comment: Question about the appropriate FPKM gene expression processing
updated 2.7 years ago by 44k • written 10.0 years ago by ▴ 120
0
votes
0
replies
9.1k
views
Comment: C: GSEA matrix error appears during analysis
10.0 years ago by AlexAbdulkaderKheirallah ▴ 120
0
votes
0
replies
9.1k
views
Comment: C: GSEA matrix error appears during analysis
10.0 years ago by AlexAbdulkaderKheirallah ▴ 120
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