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1
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2
replies
4.5k
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How can run cd-hit-est with a clstr threshold less than 0.8?
cd-hit cluster
updated 11 months ago by 10k • written 7.2 years ago by ▴ 120
2
votes
3
replies
1.1k
views
How can we explain a lower reference allele frequency than alternative allele in large populations for some SNPs?
mutation human-genome SNP
updated 15 months ago by 45k • written 15 months ago by ▴ 120
4
votes
4
replies
4.0k
views
Tools to plot gene arrow diagram
gene-arrow-diagram BGC
updated 15 months ago by ▴ 90 • written 2.6 years ago by ▴ 120
2
votes
1
reply
781
views
Extract locus length given locus accession number
genome ncbi API
updated 3.8 years ago by 151k • written 3.8 years ago by ▴ 120
0
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0
replies
1.0k
views
Comment: C: Where can get processed metagenome datasets?
4.4 years ago by m.koohi.m ▴ 120
0
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2
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1.0k
views
Where can get processed metagenome datasets?
metagenomics sequencing meta-genome
4.4 years ago by m.koohi.m ▴ 120
0
votes
0
replies
5.0k
views
Comment: C: How can find a list of proteins are neighbour?
updated 5.4 years ago by 45k • written 9.4 years ago by ▴ 120
12
votes
1
reply
15k
views
What "chrUn" stand for in UCSC genome browser web server?
ucsc genome gene
updated 5.8 years ago by 20 • written 7.7 years ago by ▴ 120
0
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0
replies
4.2k
views
Comment: C: Cosmic And 1000 Genomes Variants
6.7 years ago by m.koohi.m ▴ 120
0
votes
0
replies
1.7k
views
Is there any REST API for the tree view result of the NCBI Blast?
blast ncbi python biopython
7.5 years ago by m.koohi.m ▴ 120
1
vote
1
reply
1.4k
views
Does anyone have a cheatsheet to compare Usearch and Bowtie2 performance in different situation?
bowtie2 usearch next-gen alignment
updated 7.8 years ago by 35k • written 7.8 years ago by ▴ 120
0
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1
reply
3.3k
views
Comment: C: Bowtie2 end-to-end alignment seems does not work for Fasta files?
7.9 years ago by m.koohi.m ▴ 120
0
votes
1
reply
3.3k
views
Comment: C: Bowtie2 end-to-end alignment seems does not work for Fasta files?
7.9 years ago by m.koohi.m ▴ 120
4
votes
7
replies
3.3k
views
Bowtie2 end-to-end alignment seems does not work for Fasta files?
Bowtie2 software error alignment
7.9 years ago by m.koohi.m ▴ 120
9
votes
2
replies
2.1k
views
Is there any tool to convert a contig to illumina reads?
Assembly contigs illumina
7.9 years ago by m.koohi.m ▴ 120
0
votes
0
replies
1.7k
views
Comment: C: Identify kinase that phosphorylates/dephosphorylates a specific protein
8.1 years ago by m.koohi.m ▴ 120
2
votes
3
replies
1.7k
views
Identify kinase that phosphorylates/dephosphorylates a specific protein
kinase protein gene phosphorylate
8.1 years ago by m.koohi.m ▴ 120
3
votes
1
reply
2.5k
views
What is differences and similarites between NCI60, CCLE, CMAP?
NCI-60 CCLE CMAP genome gene
updated 8.6 years ago by ★ 4.3k • written 8.6 years ago by ▴ 120
0
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0
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2.9k
views
Comment: C: Is there any database to find the protein interfaces that already found experime
8.8 years ago by m.koohi.m ▴ 120
6
votes
6
replies
2.9k
views
Is there any database to find the protein interfaces that already found experimentally?
protein database
updated 8.8 years ago by 18k • written 8.8 years ago by ▴ 120
0
votes
0
replies
2.9k
views
Comment: C: Is there any database to find the protein interfaces that already found experime
8.8 years ago by m.koohi.m ▴ 120
0
votes
0
replies
2.9k
views
Comment: C: Is there any database to find the protein interfaces that already found experime
8.8 years ago by m.koohi.m ▴ 120
3
votes
4
replies
2.6k
views
Is there any source to find amino acid composition of different bacteria species?
genome gene amino acid composition
updated 8.9 years ago by 13k • written 8.9 years ago by ▴ 120
6
votes
1
reply
3.2k
views
Convert a paired SRA file to FASTA file
Assembly sequencing sequence
9.0 years ago by m.koohi.m ▴ 120
1
vote
1
reply
2.5k
views
Is there any aging-related gene expression database for human?
gene expression gene RNA-Seq
updated 9.3 years ago by 7.3k • written 9.3 years ago by ▴ 120
0
votes
2
replies
3.2k
views
How can find conserved domains of protein's sequence offline?
sequencing blast alignment
updated 2.7 years ago by 45k • written 9.5 years ago by ▴ 120
9
votes
6
replies
5.0k
views
6 follow
How can find a list of genes are neighbour?
proteins genes sequence
updated 9.4 years ago by 28k • written 9.4 years ago by ▴ 120
4
votes
1
reply
2.0k
views
The number of digits in NCBI Taxonomy ID have any meaningful concet?
NCBI Taxonomy species
updated 2.7 years ago by 45k • written 9.4 years ago by ▴ 120
2
votes
1
reply
1.8k
views
The first amplicon librariesis is needed to analyse the 16S data?
genome next-gen-sequencing
updated 2.6 years ago by 45k • written 9.6 years ago by ▴ 120
0
votes
0
replies
1.8k
views
Comment: C: Metagenomics with Illumina, all species genomes coverd by reads or not?
9.8 years ago by m.koohi.m ▴ 120
0
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1
reply
1.8k
views
Comment: C: Metagenomics with Illumina, all species genomes coverd by reads or not?
9.8 years ago by m.koohi.m ▴ 120
4
votes
5
replies
1.8k
views
Metagenomics with Illumina, all species genomes coverd by reads or not?
sequencing genome Assembly gene RNA-Seq
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 120
0
votes
2
replies
2.5k
views
Download bacteria/archaea genes from IMG Data Management
gene Assembly sequence
updated 2.8 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
0
replies
4.3k
views
Answer: Answer: What is the difference between different SRA reads from different lanes for one
updated 2.3 years ago by 45k • written 9.9 years ago by ▴ 120
3
votes
6
replies
4.3k
views
What is the difference between different SRA reads from different lanes for one sample?
Assembly next-gen-sequencing
updated 2.3 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
1
reply
4.3k
views
Comment: Comment: What is the difference between different SRA reads from different lanes for one
updated 2.3 years ago by 45k • written 10.0 years ago by ▴ 120
0
votes
1
reply
4.3k
views
Comment: Comment: What is the difference between different SRA reads from different lanes for one
updated 2.3 years ago by 45k • written 10.0 years ago by ▴ 120
2
votes
1
reply
1.6k
views
Is there any tools to compare the quality of different assemble read (contigs)
Assembly next-gen
updated 10.0 years ago by 6.2k • written 10.0 years ago by ▴ 120
1
vote
0
replies
8.9k
views
Answer: Answer: Is there a way to access the data stored in a .ab1 file ?
updated 3.1 years ago by 45k • written 10.4 years ago by ▴ 120
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