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2
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1
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259
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Answer: Answer: KEGG pathways
2 days ago by alserg ▴ 1000
1
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1
reply
716
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Comment: Comment: Permutations FGSEA
4 weeks ago by alserg ▴ 1000
1
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1
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716
views
Comment: Comment: Permutations FGSEA
5 weeks ago by alserg ▴ 1000
2
votes
1
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716
views
Answer: Answer: Permutations FGSEA
5 weeks ago by alserg ▴ 1000
1
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0
replies
656
views
Answer: Answer: Downloading RNAseq datasets from GEO into R
3 months ago by alserg ▴ 1000
2
votes
0
replies
791
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Answer: Answer: GSEA on non-model organisms: How to handle duplicated KEGG KO
7 months ago by alserg ▴ 1000
1
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1
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1.2k
views
Comment: Comment: Help in choosing the right metric for ranking genes in fgsea
10 months ago by alserg ▴ 1000
3
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2
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1.2k
views
Answer: Answer: Help in choosing the right metric for ranking genes in fgsea
10 months ago by alserg ▴ 1000
2
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2
replies
1.6k
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Answer: Answer: Ties in reranked list
14 months ago by alserg ▴ 1000
0
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0
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3.7k
views
Comment: Comment: collapsePathways function throwing error
20 months ago by alserg ▴ 1000
0
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0
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3.7k
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Comment: Comment: collapsePathways function throwing error
20 months ago by alserg ▴ 1000
0
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1
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3.7k
views
Answer: Answer: collapsePathways function throwing error
20 months ago by alserg ▴ 1000
0
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0
replies
729
views
Answer: Answer: how to convert kegg ids to gene names
2.2 years ago by alserg ▴ 1000
0
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1
reply
911
views
Comment: Comment: Get distribution of enrichment scores across all permutations in fgsea
2.2 years ago by alserg ▴ 1000
0
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0
replies
939
views
Comment: Comment: Finding differential subpathways of metabolic networks using RNA-seq data
2.4 years ago by alserg ▴ 1000
1
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1
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2.2k
views
Answer: Answer: fgsea resulting in an empty datafram
2.5 years ago by alserg ▴ 1000
0
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1
reply
815
views
Comment: Comment: Query Modules from KEGG
3.0 years ago by alserg ▴ 1000
1
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1
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939
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Answer: Answer: Finding differential subpathways of metabolic networks using RNA-seq data
3.0 years ago by alserg ▴ 1000
0
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0
replies
2.6k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
3.3 years ago by alserg ▴ 1000
0
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2
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2.6k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
3.3 years ago by alserg ▴ 1000
0
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1
reply
2.6k
views
Comment: Comment: fgsea result "size" parameter - can I pull out size of the original pathway?
3.3 years ago by alserg ▴ 1000
2
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0
replies
9.3k
views
Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
3.4 years ago by alserg ▴ 1000
3
votes
0
replies
9.3k
views
Comment: Comment: Any idea how to solve this error in fgsea - "Error in if (any(simpleFgseaRes$mod
3.4 years ago by alserg ▴ 1000
1
vote
0
replies
3.6k
views
Answer: A: GSEA pvalue output of 0.0. Can I make it more specific?
3.8 years ago by alserg ▴ 1000
6
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1
reply
5.2k
views
Answer: A: fgsea: What does fgseaMultilevel argument sampleSize mean/when to change it?
3.9 years ago by alserg ▴ 1000
0
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0
replies
4.7k
views
Comment: C: Thousands of significant differentially expressed genes but no significant enric
4.1 years ago by alserg ▴ 1000
1
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1
reply
4.7k
views
Comment: C: Thousands of significant differentially expressed genes but no significant enric
4.1 years ago by alserg ▴ 1000
2
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0
replies
3.6k
views
Comment: C: optimal size of gene sets for fgsea analysis
4.2 years ago by alserg ▴ 1000
2
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1
reply
3.6k
views
Answer: A: optimal size of gene sets for fgsea analysis
4.2 years ago by alserg ▴ 1000
0
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0
replies
4.5k
views
Comment: C: fgsea nMoreExtreme meaning
4.5 years ago by alserg ▴ 1000
8
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1
reply
4.5k
views
Answer: A: fgsea nMoreExtreme meaning
updated 4.5 years ago by 85k • written 4.5 years ago by ▴ 1000
1
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0
replies
4.5k
views
Comment: C: fgsea nMoreExtreme meaning
4.5 years ago by alserg ▴ 1000
1
vote
0
replies
2.9k
views
Comment: C: GSEA on preranked list with weighted enrichment statistic (exponent=1) in R
4.6 years ago by alserg ▴ 1000
1
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1
reply
5.6k
views
Comment: C: How to view all KEGG reactions?
4.7 years ago by alserg ▴ 1000
0
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0
replies
9.7k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by alserg ▴ 1000
9
votes
3
replies
5.0k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 18 months ago by 44k • written 5.2 years ago by ▴ 1000
1
vote
0
replies
5.0k
views
Comment: C: Bioinformatics Contest 2020. Call for problems
4.8 years ago by alserg ▴ 1000
0
votes
0
replies
1.9k
views
Answer: A: GSEA after MACS2 peak calling for ChIP-seq; want positive enrichment only
4.8 years ago by alserg ▴ 1000
0
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1
reply
9.7k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by alserg ▴ 1000
0
votes
1
reply
9.7k
views
Comment: C: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by alserg ▴ 1000
6
votes
2
replies
9.7k
views
Answer: A: GSEA PreRanked lists from DESeq2 results table
4.8 years ago by alserg ▴ 1000
7
votes
1
reply
4.0k
views
Answer: A: fGSEA result to csv
5.0 years ago by alserg ▴ 1000
1
vote
1
reply
4.7k
views
Answer: A: Thousands of significant differentially expressed genes but no significant enric
5.0 years ago by alserg ▴ 1000
1
vote
1
reply
3.5k
views
Comment: C: Bonferroni multiple corrections question
5.1 years ago by alserg ▴ 1000
1
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0
replies
5.0k
views
Answer: A: Getting all gene members in a Reactome Pathway
5.3 years ago by alserg ▴ 1000
0
votes
0
replies
2.5k
views
Answer: A: PCA on RNAseq time series data
5.3 years ago by alserg ▴ 1000
4
votes
1
reply
4.8k
views
Answer: A: Need help choosing genes and calculating ranks for GSEA rank file
5.4 years ago by alserg ▴ 1000
3
votes
0
replies
2.2k
views
Tool: Phanantasus: a web-application for exploratory gene expression analysis and visualization
geo microarray rna-seq heatmap gene-expression
updated 17 months ago by 44k • written 5.4 years ago by ▴ 1000
0
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0
replies
2.0k
views
Answer: A: Max/min value of enrichment score
5.4 years ago by alserg ▴ 1000
1
vote
0
replies
1.8k
views
Answer: A: Preranked GSEA statistics
5.5 years ago by alserg ▴ 1000
67 results • Page 1 of 2
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