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668
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Historical Genbank genome assemblies missing?
genome Assembly
updated 4.4 years ago by 152k • written 4.4 years ago by ▴ 80
0
votes
0
replies
573
views
Synteny map files for human and mouse for GRCh37
genome
4.5 years ago by Tails ▴ 80
0
votes
3
replies
1.1k
views
Need help finding data from Google's DeepVariant paper
genome snp sequencing
updated 5.2 years ago by 20 • written 5.4 years ago by ▴ 80
1
vote
1
reply
2.6k
views
Comment: C: Benchmarking small variant calls: TP, FP, TN, FN
5.3 years ago by Tails ▴ 80
3
votes
3
replies
1.5k
views
Can a command in RTG (or elsewhere) annotate the TP/TN/FP/FN's produced from RTG's vcfeval?
sequence genome
updated 5.3 years ago by ★ 1.7k • written 5.4 years ago by ▴ 80
0
votes
1
reply
1.6k
views
Comment: C: Correct reference for Platinum Genomes?
5.3 years ago by Tails ▴ 80
0
votes
1
reply
1.6k
views
Comment: C: Correct reference for Platinum Genomes?
5.3 years ago by Tails ▴ 80
1
vote
5
replies
1.6k
views
Correct reference for Platinum Genomes?
genome sequencing
updated 2.0 years ago by 45k • written 5.3 years ago by ▴ 80
0
votes
1
reply
1.1k
views
Comment: C: Need help finding data from Google's DeepVariant paper
5.4 years ago by Tails ▴ 80
0
votes
0
replies
4.2k
views
Comment: C: How to filter GTF file and only print lines where the tag is a certain value?
5.8 years ago by Tails ▴ 80
0
votes
2
replies
4.2k
views
Comment: C: How to filter GTF file and only print lines where the tag is a certain value?
5.8 years ago by Tails ▴ 80
1
vote
8
replies
4.2k
views
How to filter GTF file and only print lines where the tag is a certain value?
GTF awk
5.8 years ago by Tails ▴ 80
0
votes
1
reply
4.2k
views
Comment: C: How to filter GTF file and only print lines where the tag is a certain value?
5.8 years ago by Tails ▴ 80
24
votes
9
replies
27k
views
10 follow
Variant call format (VCF) file, how to get statistics per sample?
vcf
updated 2.1 years ago by ▴ 740 • written 9.8 years ago by ▴ 80
6
votes
4
replies
2.6k
views
Benchmarking small variant calls: TP, FP, TN, FN
genome sequencing SNP
updated 6.1 years ago by 48k • written 6.1 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Best resources for understanding GATK best practices pipeline (or similar)
Assembly sequence alignment genome snp
updated 6.1 years ago by 89k • written 6.1 years ago by ▴ 80
0
votes
2
replies
5.6k
views
How to extract entire info column from VCF file using bcftools
bcftools software error SNP
updated 6.2 years ago by 16k • written 6.2 years ago by ▴ 80
0
votes
0
replies
3.5k
views
Beagle imputation output, incorrect genotype probability format?
BEAGLE imputation sequence
updated 2.5 years ago by 45k • written 10.0 years ago by ▴ 80
7
votes
1
reply
3.9k
views
How to get GQ after running BCFTools?
sequencing SNP
updated 10.3 years ago by ▴ 50 • written 10.5 years ago by ▴ 80
2
votes
1
reply
1.5k
views
Missing -d option in new BCFTools?
sequence SNP
updated 10.5 years ago by 45k • written 10.5 years ago by ▴ 80
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