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2
votes
2
replies
1.0k
views
Which zUMIs output to use for differential gene expression?
zumis rnaseq smartseq3 single-cell
updated 7 weeks ago by ★ 7.3k • written 20 months ago by ★ 1.7k
6
votes
6
replies
5.3k
views
10x to cloupe
single-cell-transcriptomics 10x
12 months ago by firestar ★ 1.7k
1
vote
0
replies
5.3k
views
Answer: Answer: 10x to cloupe
12 months ago by firestar ★ 1.7k
0
votes
1
reply
5.0k
views
Comment: Comment: How to include spatial coordinate data into anndata within scanpy
15 months ago by firestar ★ 1.7k
3
votes
6
replies
7.4k
views
h5ad cellxgene to R
single-cell h5 cellxgene anndata R
21 months ago by firestar ★ 1.7k
0
votes
0
replies
1.2k
views
Comment: Comment: fastq_screen error: Failed to calculate read length
2.0 years ago by firestar ★ 1.7k
0
votes
1
reply
1.2k
views
Comment: Comment: fastq_screen error: Failed to calculate read length
2.0 years ago by firestar ★ 1.7k
3
votes
5
replies
1.2k
views
fastq_screen error: Failed to calculate read length
fastq_screen
2.0 years ago by firestar ★ 1.7k
0
votes
0
replies
921
views
Seurat analysis without ribosomal genes
single-cell transcriptomics seurat
2.0 years ago by firestar ★ 1.7k
1
vote
0
replies
1.6k
views
Comment: Comment: Tools/pipeline for analysis of smart-seq3 data
2.2 years ago by firestar ★ 1.7k
3
votes
0
replies
1.6k
views
Tutorial: Analysis of Smart-Seq3 data with kallisto-bustools
single-cell kallisto transcriptomics smart-seq3 pipeline
updated 16 months ago by • 0 • written 2.2 years ago by ★ 1.7k
5
votes
2
replies
1.6k
views
Tools/pipeline for analysis of smart-seq3 data
single-cell transcriptomics
2.2 years ago by firestar ★ 1.7k
0
votes
1
reply
1.2k
views
Comment: Comment: Differential transcript expression / differential isoform expression tool tutori
2.2 years ago by firestar ★ 1.7k
2
votes
3
replies
1.2k
views
Differential transcript expression / differential isoform expression tool tutorial
RNA-seq
updated 2.2 years ago by 45k • written 2.2 years ago by ★ 1.7k
2
votes
2
replies
7.4k
views
Answer: Answer: h5ad cellxgene to R
21 months ago by firestar ★ 1.7k
0
votes
0
replies
7.4k
views
Comment: Comment: h5ad cellxgene to R
2.2 years ago by firestar ★ 1.7k
0
votes
0
replies
1.7k
views
Comment: Comment: Running nf-core rnaseq with smart-seq3 data
2.3 years ago by firestar ★ 1.7k
0
votes
2
replies
1.7k
views
Comment: Comment: Running nf-core rnaseq with smart-seq3 data
2.3 years ago by firestar ★ 1.7k
5
votes
4
replies
1.7k
views
Running nf-core rnaseq with smart-seq3 data
smart-seq3 nf-core nextflow
2.3 years ago by firestar ★ 1.7k
3
votes
7
replies
5.9k
views
6 follow
Cellranger count pipestance failed: The read lengths are incompatible with all the chemistries
10x cellranger single-cell
updated 2.3 years ago by 150k • written 2.8 years ago by ★ 1.7k
4
votes
5
replies
1.6k
views
6 follow
Exon counts do not match gene and transcript counts
salmon rnaseq nf-core featurecounts exon
updated 2.4 years ago by ★ 18k • written 2.5 years ago by ★ 1.7k
0
votes
0
replies
4.1k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
2.6 years ago by firestar ★ 1.7k
0
votes
1
reply
4.1k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
2.6 years ago by firestar ★ 1.7k
0
votes
1
reply
4.1k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
2.7 years ago by firestar ★ 1.7k
0
votes
2
replies
4.1k
views
Comment: Comment: CellRanger runs into error when running fastq files from SRA
2.7 years ago by firestar ★ 1.7k
3
votes
12
replies
4.1k
views
CellRanger runs into error when running fastq files from SRA
cellranger 10x single-cell sra
2.6 years ago by firestar ★ 1.7k
0
votes
0
replies
5.9k
views
Comment: Comment: Cellranger count pipestance failed: The read lengths are incompatible with all t
2.8 years ago by firestar ★ 1.7k
0
votes
0
replies
1.8k
views
Comment: Comment: Find clusters using marker genes
3.2 years ago by firestar ★ 1.7k
1
vote
3
replies
1.8k
views
Find clusters using marker genes
seurat single-cell cell-typing sc-rnaseq
2.7 years ago by firestar ★ 1.7k
1
vote
0
replies
1.8k
views
Answer: Answer: Find clusters using marker genes
2.7 years ago by firestar ★ 1.7k
0
votes
1
reply
1.7k
views
Comment: Comment: Cell ranger reads do not match Seurat reads
3.4 years ago by firestar ★ 1.7k
2
votes
3
replies
1.7k
views
Cell ranger reads do not match Seurat reads
10x cellranger seurat
updated 3.4 years ago by 14k • written 3.4 years ago by ★ 1.7k
3
votes
6
replies
2.2k
views
Gene names to Protein (cell surface markers) mapping
cell transcriptomics surface marker proteomics
3.4 years ago by firestar ★ 1.7k
1
vote
0
replies
2.2k
views
Answer: Answer: Gene names to Protein (cell surface markers) mapping
3.4 years ago by firestar ★ 1.7k
0
votes
0
replies
2.2k
views
Comment: Comment: Gene names to Protein (cell surface markers) mapping
3.4 years ago by firestar ★ 1.7k
0
votes
1
reply
2.2k
views
Comment: Comment: Gene to Protein mapping
3.4 years ago by firestar ★ 1.7k
0
votes
0
replies
946
views
Comment: Comment: Odd-looking cell cycle scores in scRNA-seq data
3.4 years ago by firestar ★ 1.7k
0
votes
1
reply
3.7k
views
Answer: Answer: Remove contamination across cell clusters
3.5 years ago by firestar ★ 1.7k
8
votes
1
reply
4.6k
views
Answer: Answer: Clustering resolution for scRNA-seq
3.6 years ago by firestar ★ 1.7k
0
votes
0
replies
4.1k
views
Comment: Comment: Bad volcano plot
3.6 years ago by firestar ★ 1.7k
4
votes
4
replies
4.1k
views
Bad volcano plot
diferential-gene-expression rna-seq sc-rnaseq
updated 3.6 years ago by ▴ 120 • written 3.6 years ago by ★ 1.7k
0
votes
1
reply
3.3k
views
Comment: A: TMM normalized TPM
4.1 years ago by firestar ★ 1.7k
0
votes
0
replies
3.3k
views
Comment: C: TMM normalized TPM
4.1 years ago by firestar ★ 1.7k
4
votes
12
replies
3.3k
views
TMM normalized TPM
RNA-Seq
4.1 years ago by firestar ★ 1.7k
0
votes
0
replies
3.3k
views
Comment: C: TMM normalized TPM
4.1 years ago by firestar ★ 1.7k
0
votes
1
reply
3.3k
views
Comment: C: TMM normalized TPM
4.1 years ago by firestar ★ 1.7k
0
votes
2
replies
3.3k
views
Comment: C: Gene length corrected TMM normalized data
4.1 years ago by firestar ★ 1.7k
0
votes
0
replies
7.8k
views
Comment: C: Seurat: Assay to use for differential expression in an integrated data
4.1 years ago by firestar ★ 1.7k
2
votes
2
replies
7.8k
views
Seurat: Assay to use for differential expression in an integrated data
seurat 10x single-cell RNA-Seq
4.1 years ago by firestar ★ 1.7k
0
votes
0
replies
3.7k
views
Comment: C: Merging integrated datasets
4.2 years ago by firestar ★ 1.7k
187 results • Page 1 of 4
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