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0
votes
2
replies
3.5k
views
Merging integrated datasets
single-cell RNA-Seq Seurat R integration
3.8 years ago by firestar ★ 1.6k
0
votes
0
replies
4.9k
views
Comment: C: 10x to cloupe
3.9 years ago by firestar ★ 1.6k
48
votes
15
replies
18k
views
10 follow
DESeq2 compare all levels
differential-gene-expression RNA-Seq DESeq2
updated 8 months ago by • 0 • written 6.4 years ago by ★ 1.6k
1
vote
0
replies
1.0k
views
Comment: C: Evaluate genome annotation quality
4.3 years ago by firestar ★ 1.6k
1
vote
2
replies
1.0k
views
Evaluate genome annotation quality
annotation genome
updated 4.3 years ago by ▴ 530 • written 4.3 years ago by ★ 1.6k
3
votes
1
reply
2.1k
views
RNA Seq: Differential expression model formula
RNA-Seq R DESeq edgeR
updated 4.7 years ago by 20 • written 8.4 years ago by ★ 1.6k
5
votes
3
replies
5.1k
views
RNA velocity plot demystified
rna-velocity velocyto single-cell
updated 4.8 years ago by ▴ 30 • written 4.8 years ago by ★ 1.6k
0
votes
0
replies
5.1k
views
Comment: C: RNA velocity plot demystified
4.8 years ago by firestar ★ 1.6k
0
votes
1
reply
6.5k
views
Moving data from Seurat to ScanPy
seurat scanpy single-cell R python
updated 4.8 years ago by ▴ 230 • written 4.8 years ago by ★ 1.6k
0
votes
0
replies
5.8k
views
Answer: A: how to create a minimun spanning tree with R
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.6k
2
votes
3
replies
1.8k
views
Downstream applications of Differential transcript expression
RNA-Seq
updated 5.0 years ago by 20 • written 7.4 years ago by ★ 1.6k
4
votes
3
replies
7.7k
views
Loading PLINK files to Haploview
plink haploview SNP
updated 3.2 years ago by ▴ 50 • written 6.8 years ago by ★ 1.6k
0
votes
1
reply
2.0k
views
Variant calling pacbio bacteria
pacbio variant-calling bacteria sniffles pbsv
updated 5.2 years ago by ▴ 330 • written 5.3 years ago by ★ 1.6k
1
vote
1
reply
2.2k
views
Converting bax.h5 to CCS reads
pacbio
5.3 years ago by firestar ★ 1.6k
0
votes
1
reply
6.7k
views
Comment: C: Fixing batch effect with seurat integrate
5.4 years ago by firestar ★ 1.6k
1
vote
3
replies
6.7k
views
Fixing batch effect with seurat integrate
scrna.seq seurat single-cell
5.4 years ago by firestar ★ 1.6k
28
votes
30
replies
7.9k
views
6 follow
Similarity between two FASTA files
similarity distance
updated 5.5 years ago by 20 • written 6.3 years ago by ★ 1.6k
4
votes
0
replies
5.6k
views
Answer: C: UMAP interpretation in scRNA-seq analysis
5.6 years ago by firestar ★ 1.6k
0
votes
1
reply
2.2k
views
Applications of TPM normalisation
RNA-Seq deseq2 normalisation dge
5.6 years ago by firestar ★ 1.6k
0
votes
0
replies
1.4k
views
Model selection for differential expression
RNA-Seq methylation limma differential expression
5.7 years ago by firestar ★ 1.6k
0
votes
0
replies
4.3k
views
Answer: A: M Value from Non-Normalized Methylated and Unmethylated Signal 450k
5.7 years ago by firestar ★ 1.6k
0
votes
0
replies
21k
views
Comment: C: bwa mem: Passing a variable to read group
5.8 years ago by firestar ★ 1.6k
7
votes
2
replies
3.6k
views
Multiple sequence alignment and visualisation for bacterial genomes
bacteria alignment MSA sequencing genome
5.8 years ago by firestar ★ 1.6k
0
votes
0
replies
10k
views
Comment: C: Command line tool for translated multifasta nucleotide to aminoacid sequence
5.8 years ago by firestar ★ 1.6k
4
votes
5
replies
4.4k
views
Median coverage from BAM file
coverage DNA-Seq
5.8 years ago by firestar ★ 1.6k
2
votes
0
replies
3.2k
views
Answer: A: PacBio merge runs
5.9 years ago by firestar ★ 1.6k
4
votes
1
reply
3.2k
views
PacBio merge runs
pacbio assembly
5.9 years ago by firestar ★ 1.6k
0
votes
1
reply
1.2k
views
Comment: C: Fasta length does not match Ensembl info
5.9 years ago by firestar ★ 1.6k
0
votes
0
replies
3.4k
views
Comment: C: Arrow Assembly polishing Error "KeyError: 'BASECALLERVERSION'"
5.9 years ago by firestar ★ 1.6k
1
vote
0
replies
26k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
6.1 years ago by firestar ★ 1.6k
32
votes
4
replies
8.7k
views
Tutorial: Fast LD computation from VCF files using tomahawk
ld snp vcf vcftools bcftools
updated 20 months ago by 44k • written 6.1 years ago by ★ 1.6k
1
vote
0
replies
26k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
6.1 years ago by firestar ★ 1.6k
0
votes
0
replies
1.2k
views
Comment: C: Fasta length does not match Ensembl info
6.1 years ago by firestar ★ 1.6k
1
vote
5
replies
1.2k
views
Fasta length does not match Ensembl info
annotation fasta
updated 6.1 years ago by 11k • written 6.1 years ago by ★ 1.6k
0
votes
0
replies
21k
views
Comment: C: bwa mem: Passing a variable to read group
6.1 years ago by firestar ★ 1.6k
0
votes
1
reply
1.4k
views
Mauve export similarity
multiple-sequence-alignment mauve
updated 18 months ago by 44k • written 6.3 years ago by ★ 1.6k
0
votes
0
replies
9.6k
views
Comment: C: Data for drawing Heatmaps (RNA-seq)
6.1 years ago by firestar ★ 1.6k
3
votes
1
reply
1.9k
views
Removing reads from fastq file based on position
RNA-Seq next-gen-sequencing
updated 2.4 years ago by 44k • written 8.8 years ago by ★ 1.6k
9
votes
1
reply
42k
views
Comment: C: Raw counts to TPM in R
updated 6.2 years ago by 44k • written 6.2 years ago by ★ 1.6k
33
votes
4
replies
42k
views
Raw counts to TPM in R
RNA-Seq R
updated 5 months ago by 85k • written 6.2 years ago by ★ 1.6k
1
vote
1
reply
7.9k
views
Comment: C: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
0
votes
1
reply
7.9k
views
Comment: C: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
0
votes
1
reply
7.9k
views
Comment: C: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
3
votes
2
replies
7.9k
views
Answer: A: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
0
votes
3
replies
7.9k
views
Comment: C: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
0
votes
1
reply
7.9k
views
Comment: C: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
0
votes
1
reply
7.9k
views
Comment: C: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
1
vote
1
reply
7.9k
views
Comment: A: Similarity between two FASTA files
6.3 years ago by firestar ★ 1.6k
2
votes
0
replies
28k
views
Comment: C: Alignment and mapping
6.3 years ago by firestar ★ 1.6k
0
votes
1
reply
1.8k
views
Comment: C: RNA-Seq identify stably expressed genes
6.6 years ago by firestar ★ 1.6k
187 results • Page 2 of 4
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