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comments
0
votes
1
reply
1.5k
views
Comment:
Comment: Reads in IGV are mostly in intron regions
20 months ago by
Kai_Qi
▴ 130
0
votes
1
reply
1.5k
views
Comment:
Comment: Reads in IGV are mostly in intron regions
20 months ago by
Kai_Qi
▴ 130
0
votes
1
reply
1.5k
views
Comment:
Comment: Reads in IGV are mostly in intron regions
20 months ago by
Kai_Qi
▴ 130
1
vote
8
replies
1.5k
views
Reads in IGV are mostly in intron regions
Patchseq
RNA-seq
20 months ago by
Kai_Qi
▴ 130
1
vote
1
reply
1.1k
views
Software/packages for analyzing differential isoforms from RNA-seq data?
RNA-Seq
next-gen-sequencing
updated 2.7 years ago by
Ram
45k • written 4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
2.0k
views
Comment:
Comment: Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' fo
3.1 years ago by
Kai_Qi
▴ 130
1
vote
4
replies
2.0k
views
Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' found.
next-gen-sequencing
RNA-Seq
updated 3.0 years ago by
Ram
45k • written 4.3 years ago by
Kai_Qi
▴ 130
0
votes
1
reply
1.2k
views
Comment:
Comment: Get upstream and downstream exon's starting site and ending site of an retained
3.7 years ago by
Kai_Qi
▴ 130
2
votes
3
replies
1.2k
views
Get upstream and downstream exon's starting site and ending site of an retained introns
RNAseq
updated 3.7 years ago by
ATpoint
87k • written 3.7 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
2.4k
views
Comment:
Comment: how to understand the P value of the Deseq2 results
3.9 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
2.4k
views
Comment:
Comment: how to understand the P value of the Deseq2 results
3.9 years ago by
Kai_Qi
▴ 130
4
votes
5
replies
2.4k
views
how to understand the P value of the Deseq2 results
statistics
p_value
DEseq2
updated 3.9 years ago by
Michael Love
★ 2.6k • written 3.9 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
3.0k
views
Comment:
Comment: gzip: merged.fastq.gz not in gzip format
3.9 years ago by
Kai_Qi
▴ 130
0
votes
1
reply
3.0k
views
Comment:
Comment: gzip: merged.fastq.gz not in gzip format
3.9 years ago by
Kai_Qi
▴ 130
8
votes
4
replies
3.0k
views
gzip: merged.fastq.gz not in gzip format
RNAseq
3.9 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.3k
views
Comment:
C: gencode gtf file derived geneID can't be annotated to gene symbol following Dese
4.0 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.3k
views
Comment:
C: gencode gtf file derived geneID can't be annotated to gene symbol following Dese
4.0 years ago by
Kai_Qi
▴ 130
2
votes
3
replies
1.3k
views
gencode gtf file derived geneID can't be annotated to gene symbol following Deseq2 manual
R
RNA-Seq
gene
4.0 years ago by
Kai_Qi
▴ 130
2
votes
3
replies
1.1k
views
MEME cannot handle 318 sequence?
RNA-Seq
ChIP-Seq
rna-seq
genome
sequencing
updated 4.2 years ago by
Alex Reynolds
36k • written 4.2 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.1k
views
Comment:
C: MEME cannot handle 318 sequence?
4.2 years ago by
Kai_Qi
▴ 130
1
vote
1
reply
837
views
how to do GeneOntology in R using DAVID or other packages to recommed?
RNA-Seq
R
rna-seq
gene
4.2 years ago by
Kai_Qi
▴ 130
1
vote
1
reply
1.4k
views
Linear regression of the RNAseq results to get the genes whose expression change belong to the same trends
RNA-Seq
R
rna-seq
sequencing
updated 4.2 years ago by
thyleal
▴ 160 • written 4.2 years ago by
Kai_Qi
▴ 130
1
vote
0
replies
1.8k
views
Answer:
C: Deseq2: time series in 1 condition. Error in nbinomLRT(object, full = full, redu
4.2 years ago by
Kai_Qi
▴ 130
0
votes
1
reply
1.8k
views
Comment:
C: Deseq2: time series in 1 condition. Error in nbinomLRT(object, full = full, redu
4.2 years ago by
Kai_Qi
▴ 130
1
vote
3
replies
1.8k
views
Deseq2: time series in 1 condition. Error in nbinomLRT(object, full = full, reduced = reduced, quiet = quiet
R
RNA-Seq
next-gen
sequencing
4.2 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
949
views
Comment:
C: Removing ">" before coordinates and separate the coordinates in a single string
4.2 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
949
views
Comment:
C: Removing ">" before coordinates and separate the coordinates in a single string
4.2 years ago by
Kai_Qi
▴ 130
1
vote
3
replies
949
views
Removing ">" before coordinates and separate the coordinates in a single string format into a bed file
rna-seq
gene
next-gen
sequence
4.2 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
734
views
Comment:
C: Header of first sequence is missing after grep
4.2 years ago by
Kai_Qi
▴ 130
2
votes
2
replies
734
views
Header of first sequence is missing after grep
rna-seq
RNA-Seq
sequencing
next-gen
gene
updated 4.2 years ago by
Pierre Lindenbaum
165k • written 4.2 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
4.1k
views
Comment:
C: Math-CDF Perl Module compiler issue
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
2.2k
views
Comment:
C: ls: cannot access *.filter.trim.fastq.gz: No such file or directory (problems wh
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
2.2k
views
Comment:
C: ls: cannot access *.filter.trim.fastq.gz: No such file or directory (problems wh
4.3 years ago by
Kai_Qi
▴ 130
3
votes
4
replies
2.2k
views
ls: cannot access *.filter.trim.fastq.gz: No such file or directory (problems when combining individual steps into a full script)
RNA-Seq
rna-seq
sequencing
sequence
updated 4.3 years ago by
Ram
45k • written 4.3 years ago by
Kai_Qi
▴ 130
0
votes
2
replies
1.2k
views
Comment:
C: how to get the geneNames or bedfile from fasta sequences
4.3 years ago by
Kai_Qi
▴ 130
0
votes
1
reply
1.2k
views
Comment:
C: how to get the geneNames or bedfile from fasta sequences
4.3 years ago by
Kai_Qi
▴ 130
1
vote
6
replies
1.2k
views
how to get the geneNames or bedfile from fasta sequences
RNA-Seq
genome
gene
ChIP-Seq
updated 4.3 years ago by
xiaoguang
▴ 160 • written 4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.0k
views
Comment:
C: will the bam files mapped from Ensembl index be ok to do featurecount with mm10
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.7k
views
Comment:
C: 9th column of the GTF file is exon_id instead of gene_id, is this normal?
4.3 years ago by
Kai_Qi
▴ 130
0
votes
2
replies
1.7k
views
9th column of the GTF file is exon_id instead of gene_id, is this normal?
RNA-Seq
alignment
sequencing
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.0k
views
Comment:
C: will the bam files mapped from Ensembl index be ok to do featurecount with mm10
4.3 years ago by
Kai_Qi
▴ 130
1
vote
3
replies
1.0k
views
will the bam files mapped from Ensembl index be ok to do featurecount with mm10
RNA-Seq
rna-seq
alignment
sequence
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
42k
views
Comment:
C: How to know that your RNA-seq is stranded or not?
4.3 years ago by
Kai_Qi
▴ 130
6
votes
2
replies
1.4k
views
samtools index cannot index concatenated bam?
alignment
rna-seq
RNA-Seq
next-gen
updated 4.3 years ago by
swbarnes2
14k • written 4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.7k
views
Comment:
C: using macs2 to call peaks on eCLIP-seq data
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
714
views
How to visulize bed6 file generated from Pureclip analysis
RNA-Seq
rna-seq
sequencing
next-gen
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
2.0k
views
Comment:
C: Can't load reference sequence from file 'GRCh37.fa': Unexpected character 'M' fo
4.3 years ago by
Kai_Qi
▴ 130
0
votes
1
reply
1.7k
views
using macs2 to call peaks on eCLIP-seq data
rna-seq
RNA-Seq
ChIP-Seq
4.3 years ago by
Kai_Qi
▴ 130
0
votes
0
replies
1.3k
views
Filtering uniquely mapping reads from bam files generated from STAR
rna-seq
RNA-Seq
ChIP-Seq
next-gen
4.3 years ago by
Kai_Qi
▴ 130
0
votes
1
reply
2.5k
views
Comment:
C: sbacth on multiple fastq files sequentially
4.4 years ago by
Kai_Qi
▴ 130
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