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Comment: Comment: transcriptomic data for molecular subtyping
9 months ago by mark.ziemann ★ 1.9k
2
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0
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592
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Answer: Answer: How to find GO function from GEO2R results
9 months ago by mark.ziemann ★ 1.9k
1
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1
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525
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Answer: Answer: transcriptomic data for molecular subtyping
9 months ago by mark.ziemann ★ 1.9k
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0
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399
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Answer: Answer: Aneuploidy analysis from WGS
9 months ago by mark.ziemann ★ 1.9k
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1
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723
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Comment: Comment: Simulation of gene level methylation data
9 months ago by mark.ziemann ★ 1.9k
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2
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1.2k
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Answer: Answer: Geo2R troubleshooting
9 months ago by mark.ziemann ★ 1.9k
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1
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723
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Answer: Answer: Simulation of gene level methylation data
9 months ago by mark.ziemann ★ 1.9k
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1
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1.1k
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Answer: Answer: Methods to analyze EM-seq data
9 months ago by mark.ziemann ★ 1.9k
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620
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Comment: Comment: Error in mitch reports in R
10 months ago by mark.ziemann ★ 1.9k
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0
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528
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Answer: Answer: mitch analysis report priority by standard deviation
10 months ago by mark.ziemann ★ 1.9k
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1
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461
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Answer: Answer: How to get differntial Protein expression from protein abundance?
10 months ago by mark.ziemann ★ 1.9k
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658
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Comment: Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
15 months ago by mark.ziemann ★ 1.9k
0
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1
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928
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Comment: Comment: ClusterProfiler GeneRatio demoninator not the same for all values
15 months ago by mark.ziemann ★ 1.9k
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0
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864
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Answer: Answer: Biological replicates in RNA-seq
18 months ago by mark.ziemann ★ 1.9k
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1
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658
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Answer: Answer: clusterprofile enrichment analysis
18 months ago by mark.ziemann ★ 1.9k
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1.6k
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Comment: Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
22 months ago by mark.ziemann ★ 1.9k
3
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1
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1.1k
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Answer: Answer: What exactly are unmappable regions?
22 months ago by mark.ziemann ★ 1.9k
3
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1
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2.1k
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Answer: Answer: gseGO by fold-change returns errors
22 months ago by mark.ziemann ★ 1.9k
1
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1
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737
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Comment: Comment: How can I quantify degradation of DNA present in the sample after sequencing?
23 months ago by mark.ziemann ★ 1.9k
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0
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921
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Answer: Answer: Combining multiple datasets increases the fgsea p-value
23 months ago by mark.ziemann ★ 1.9k
4
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0
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1.8k
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Answer: Answer: How to create a new gene signature from RNAseq data
2.3 years ago by mark.ziemann ★ 1.9k
0
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0
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746
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Comment: Comment: Finding the similarity between two arrays of sequences
2.3 years ago by mark.ziemann ★ 1.9k
1
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1
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749
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Answer: Answer: Horizontal Gene Tranfer/Recombination
2.3 years ago by mark.ziemann ★ 1.9k
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0
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1.5k
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Comment: Comment: feature counts invalid parameter
2.3 years ago by mark.ziemann ★ 1.9k
3
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1
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719
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Answer: Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
2.3 years ago by mark.ziemann ★ 1.9k
2
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1
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1.0k
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Comment: Comment: GSEA - Software or R
2.3 years ago by mark.ziemann ★ 1.9k
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1
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825
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Comment: Comment: blastn command line
2.3 years ago by mark.ziemann ★ 1.9k
1
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1
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863
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Answer: Answer: sequence error
2.3 years ago by mark.ziemann ★ 1.9k
2
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0
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1.5k
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Answer: Answer: GC content calculation in percentage
2.3 years ago by mark.ziemann ★ 1.9k
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0
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675
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Answer: Answer: Pathway Enrichment Analysis according to tumor mutation burden.
2.3 years ago by mark.ziemann ★ 1.9k
0
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0
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1.8k
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Comment: Comment: How can I do an inner_join with multiple .csv files on the linux command line?
2.3 years ago by mark.ziemann ★ 1.9k
3
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2
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1.8k
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Answer: Answer: How can I do an inner_join with multiple .csv files on the linux command line?
2.3 years ago by mark.ziemann ★ 1.9k
1
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0
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925
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Comment: Comment: DNA sequencing from cord blood stem cells
2.3 years ago by mark.ziemann ★ 1.9k
1
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0
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642
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Comment: Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
2.3 years ago by mark.ziemann ★ 1.9k
2
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1
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925
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Answer: Answer: DNA sequencing from cord blood stem cells
2.3 years ago by mark.ziemann ★ 1.9k
2
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1
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914
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Answer: Answer: Accessing particular gene set with msigdbr on R
2.3 years ago by mark.ziemann ★ 1.9k
4
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1
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936
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Answer: Answer: Repeats/Transposons finding
2.4 years ago by mark.ziemann ★ 1.9k
0
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1
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690
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Answer: Answer: How to get gene expression data from list of gene
2.4 years ago by mark.ziemann ★ 1.9k
0
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0
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1.1k
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Comment: Comment: 3d plot in matplotlib of my own data
2.4 years ago by mark.ziemann ★ 1.9k
2
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0
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805
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Comment: Comment: Good statistics for RNA-seq alignments using RSEM
2.4 years ago by mark.ziemann ★ 1.9k
1
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0
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503
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Answer: Answer: Bacterial small-rna analysis
2.4 years ago by mark.ziemann ★ 1.9k
0
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0
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3.2k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
2.4 years ago by mark.ziemann ★ 1.9k
0
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0
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1.8k
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Comment: Comment: RepeatMasker error
2.4 years ago by mark.ziemann ★ 1.9k
0
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1
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3.2k
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Comment: Comment: mapping reads using kallisto - rna seq analysis
2.4 years ago by mark.ziemann ★ 1.9k
2
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0
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694
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Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
2.4 years ago by mark.ziemann ★ 1.9k
1
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0
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587
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Answer: Answer: How to identify the genome build a dataset was aligned too?
2.4 years ago by mark.ziemann ★ 1.9k
0
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0
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1.0k
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Comment: Comment: NGS reads calculation
2.4 years ago by mark.ziemann ★ 1.9k
1
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1
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1.8k
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Comment: Comment: RepeatMasker error
2.4 years ago by mark.ziemann ★ 1.9k
16
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11
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5.4k
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9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 18 months ago by 44k • written 2.7 years ago by ★ 1.9k
1
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0
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1.5k
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Comment: Comment: DMR calling for EWAS meta-analysis
3.0 years ago by mark.ziemann ★ 1.9k
210 results • Page 1 of 5
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