Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
4
votes
1
reply
1.2k
views
Answer: Answer: Repeats/Transposons finding
2.7 years ago by mark.ziemann ★ 2.0k
0
votes
1
reply
789
views
Answer: Answer: How to get gene expression data from list of gene
2.7 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
1.3k
views
Comment: Comment: 3d plot in matplotlib of my own data
2.7 years ago by mark.ziemann ★ 2.0k
2
votes
0
replies
947
views
Comment: Comment: Good statistics for RNA-seq alignments using RSEM
2.7 years ago by mark.ziemann ★ 2.0k
1
vote
0
replies
629
views
Answer: Answer: Bacterial small-rna analysis
2.7 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
3.5k
views
Comment: Comment: mapping reads using kallisto - rna seq analysis
2.7 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
2.2k
views
Comment: Comment: RepeatMasker error
2.7 years ago by mark.ziemann ★ 2.0k
0
votes
1
reply
3.5k
views
Comment: Comment: mapping reads using kallisto - rna seq analysis
2.7 years ago by mark.ziemann ★ 2.0k
2
votes
0
replies
809
views
Answer: Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
2.7 years ago by mark.ziemann ★ 2.0k
1
vote
0
replies
691
views
Answer: Answer: How to identify the genome build a dataset was aligned too?
2.7 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
1.2k
views
Comment: Comment: NGS reads calculation
2.7 years ago by mark.ziemann ★ 2.0k
1
vote
1
reply
2.2k
views
Comment: Comment: RepeatMasker error
2.7 years ago by mark.ziemann ★ 2.0k
16
votes
11
replies
6.1k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 22 months ago by 45k • written 3.1 years ago by ★ 2.0k
1
vote
0
replies
1.7k
views
Comment: Comment: DMR calling for EWAS meta-analysis
3.3 years ago by mark.ziemann ★ 2.0k
0
votes
1
reply
1.4k
views
Comment: Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
3.7 years ago by mark.ziemann ★ 2.0k
1
vote
2
replies
1.7k
views
DMR calling for EWAS meta-analysis
DNA methylation Epigenetics DMR calling
3.3 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
896
views
Comment: C: Tool/Pipeline to get annotations from RNA-Seq
4.4 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
1.4k
views
Answer: A: Number of replicates in each group in RNA seq
4.5 years ago by mark.ziemann ★ 2.0k
1
vote
0
replies
1.0k
views
Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
4.5 years ago by mark.ziemann ★ 2.0k
1
vote
1
reply
1.9k
views
Comment: C: Any reason for higher reported levels of non-CG methylation when analysing non-d
5.1 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
2.8k
views
Comment: C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
5.1 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
4.3k
views
Comment: C: How to get 1 top hit only for each query in blastx
5.1 years ago by mark.ziemann ★ 2.0k
0
votes
1
reply
1.4k
views
Comment: C: Macs2 output shows only single basepair peak instead of a section of DNA
5.1 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
5.2k
views
Comment: C: RNA seq with 2 biological replicates
5.1 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
1.9k
views
Answer: A: Location of Genes on Chromosome
5.1 years ago by mark.ziemann ★ 2.0k
0
votes
1
reply
1.2k
views
Comment: C: find a correct gene symbol for lncRNA
5.2 years ago by mark.ziemann ★ 2.0k
0
votes
1
reply
6.8k
views
Answer: A: /bin/bash/ command not found
5.2 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
6.8k
views
Comment: C: /bin/bash/ command not found
5.2 years ago by mark.ziemann ★ 2.0k
2
votes
1
reply
5.2k
views
Answer: A: RNA seq with 2 biological replicates
5.2 years ago by mark.ziemann ★ 2.0k
1
vote
0
replies
1.8k
views
Answer: A: Safe to convert entrez gene id to ensembl gene id
5.2 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
1.7k
views
Answer: A: How to decide the parameters and parameter values when running ChIP-seq Peak Cal
5.2 years ago by mark.ziemann ★ 2.0k
2
votes
0
replies
796
views
Answer: A: Primer Design Validation
5.2 years ago by mark.ziemann ★ 2.0k
6
votes
0
replies
27k
views
Answer: A: BWA MEM Algorithm
updated 5.2 years ago by 45k • written 9.9 years ago by ★ 2.0k
1
vote
0
replies
2.0k
views
Answer: A: Software to count gene loss in batch
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 2.0k
0
votes
1
reply
2.8k
views
Comment: C: Cell Line gene expression Analysis with multiple replicates
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 2.0k
0
votes
0
replies
2.8k
views
Comment: C: Descrepancy with MACS model parameter for ChIP-Seq in tumor samples for Histone
updated 5.4 years ago by 45k • written 9.4 years ago by ★ 2.0k
0
votes
1
reply
1.6k
views
Comment: C: Extract flanking regions from bam files based on coverage threshold
5.4 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
3.2k
views
Answer: A: Is there an online resource with freely available transcriptomes data from?
5.4 years ago by mark.ziemann ★ 2.0k
1
vote
0
replies
983
views
Answer: A: Is BWT algorithm suitable for all types of alignment task?
5.4 years ago by mark.ziemann ★ 2.0k
0
votes
1
reply
1.6k
views
Comment: C: Extract flanking regions from bam files based on coverage threshold
5.4 years ago by mark.ziemann ★ 2.0k
0
votes
0
replies
2.2k
views
Comment: C: Tactics for analysis of large number of highly similar diseased samples from RNA
updated 5.4 years ago by 45k • written 9.7 years ago by ★ 2.0k
1
vote
1
reply
3.6k
views
Answer: A: How to discover new mutations in a derived strain relative to a reference genome
updated 5.4 years ago by 45k • written 9.7 years ago by ★ 2.0k
0
votes
0
replies
5.9k
views
Answer: A: counting reads with featureCounts - uniquely assign reads to transcripts
updated 5.4 years ago by 45k • written 9.8 years ago by ★ 2.0k
0
votes
1
reply
5.3k
views
Comment: C: Problems with STAR mapping output
updated 5.4 years ago by 45k • written 9.8 years ago by ★ 2.0k
2
votes
1
reply
3.0k
views
Answer: Answer: Help simulating RRBS reads
updated 2.2 years ago by 45k • written 9.8 years ago by ★ 2.0k
1
vote
0
replies
16k
views
Answer: A: Extracting specific FASTA sequences from a complex FASTA file
updated 5.5 years ago by 45k • written 10.1 years ago by ★ 2.0k
0
votes
0
replies
1.5k
views
Comment: C: Detecting GC Bias in Transcriptomes (RNA-seq)
5.7 years ago by mark.ziemann ★ 2.0k
2
votes
0
replies
1.6k
views
Comment: C: How to do the WGCNA in R
5.7 years ago by mark.ziemann ★ 2.0k
5
votes
1
reply
5.2k
views
Answer: A: fgsea tutorial issue with BiocParallel
6.1 years ago by mark.ziemann ★ 2.0k
8
votes
1
reply
3.1k
views
Tool: Digital Expression Explorer
RNA-Seq GEO
updated 2.6 years ago by 45k • written 9.5 years ago by ★ 2.0k
224 results • Page 2 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6