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Comment: Comment: Excel functions to set anchor points onto a sequence to facilitate sequence bloc
3.4 years ago by mark.ziemann ★ 1.9k
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2
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1.5k
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DMR calling for EWAS meta-analysis
DNA methylation Epigenetics DMR calling
3.0 years ago by mark.ziemann ★ 1.9k
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801
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Comment: C: Tool/Pipeline to get annotations from RNA-Seq
4.1 years ago by mark.ziemann ★ 1.9k
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1.3k
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Answer: A: Number of replicates in each group in RNA seq
4.2 years ago by mark.ziemann ★ 1.9k
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933
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Answer: A: CAST/EiJ mouse strain Reference Transcriptome (do we have one? if not, how to bu
4.2 years ago by mark.ziemann ★ 1.9k
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1
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1.8k
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Comment: C: Any reason for higher reported levels of non-CG methylation when analysing non-d
4.7 years ago by mark.ziemann ★ 1.9k
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Comment: C: Best way to find all downloadable publicly available raw fastq files from SRA/GE
4.8 years ago by mark.ziemann ★ 1.9k
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3.9k
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Comment: C: How to get 1 top hit only for each query in blastx
4.8 years ago by mark.ziemann ★ 1.9k
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1
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1.3k
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Comment: C: Macs2 output shows only single basepair peak instead of a section of DNA
4.8 years ago by mark.ziemann ★ 1.9k
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4.6k
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Comment: C: RNA seq with 2 biological replicates
4.8 years ago by mark.ziemann ★ 1.9k
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1.6k
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Answer: A: Location of Genes on Chromosome
4.8 years ago by mark.ziemann ★ 1.9k
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1
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1.1k
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Comment: C: find a correct gene symbol for lncRNA
4.8 years ago by mark.ziemann ★ 1.9k
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1
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6.3k
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Answer: A: /bin/bash/ command not found
4.8 years ago by mark.ziemann ★ 1.9k
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6.3k
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Comment: C: /bin/bash/ command not found
4.8 years ago by mark.ziemann ★ 1.9k
2
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1
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4.6k
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Answer: A: RNA seq with 2 biological replicates
4.8 years ago by mark.ziemann ★ 1.9k
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0
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1.6k
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Answer: A: Safe to convert entrez gene id to ensembl gene id
4.8 years ago by mark.ziemann ★ 1.9k
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0
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1.5k
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Answer: A: How to decide the parameters and parameter values when running ChIP-seq Peak Cal
4.8 years ago by mark.ziemann ★ 1.9k
2
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0
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705
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Answer: A: Primer Design Validation
4.8 years ago by mark.ziemann ★ 1.9k
6
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0
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26k
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Answer: A: BWA MEM Algorithm
updated 4.9 years ago by 44k • written 9.5 years ago by ★ 1.9k
1
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0
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1.8k
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Answer: A: Software to count gene loss in batch
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.9k
0
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1
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2.7k
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Comment: C: Cell Line gene expression Analysis with multiple replicates
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.9k
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0
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2.7k
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Comment: C: Descrepancy with MACS model parameter for ChIP-Seq in tumor samples for Histone
updated 5.0 years ago by 44k • written 9.0 years ago by ★ 1.9k
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1
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1.4k
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Comment: C: Extract flanking regions from bam files based on coverage threshold
5.0 years ago by mark.ziemann ★ 1.9k
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3.0k
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Answer: A: Is there an online resource with freely available transcriptomes data from?
5.0 years ago by mark.ziemann ★ 1.9k
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832
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Answer: A: Is BWT algorithm suitable for all types of alignment task?
5.0 years ago by mark.ziemann ★ 1.9k
0
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1
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1.4k
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Comment: C: Extract flanking regions from bam files based on coverage threshold
5.0 years ago by mark.ziemann ★ 1.9k
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0
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2.1k
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Comment: C: Tactics for analysis of large number of highly similar diseased samples from RNA
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 1.9k
1
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1
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3.3k
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Answer: A: How to discover new mutations in a derived strain relative to a reference genome
updated 5.0 years ago by 44k • written 9.3 years ago by ★ 1.9k
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5.6k
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Answer: A: counting reads with featureCounts - uniquely assign reads to transcripts
updated 5.0 years ago by 44k • written 9.4 years ago by ★ 1.9k
0
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1
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5.1k
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Comment: C: Problems with STAR mapping output
updated 5.1 years ago by 44k • written 9.4 years ago by ★ 1.9k
2
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1
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2.8k
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Answer: Answer: Help simulating RRBS reads
updated 22 months ago by 44k • written 9.4 years ago by ★ 1.9k
1
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0
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15k
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Answer: A: Extracting specific FASTA sequences from a complex FASTA file
updated 5.1 years ago by 44k • written 9.7 years ago by ★ 1.9k
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0
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1.3k
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Comment: C: Detecting GC Bias in Transcriptomes (RNA-seq)
5.3 years ago by mark.ziemann ★ 1.9k
2
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0
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1.4k
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Comment: C: How to do the WGCNA in R
5.3 years ago by mark.ziemann ★ 1.9k
5
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1
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5.0k
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Answer: A: fgsea tutorial issue with BiocParallel
5.8 years ago by mark.ziemann ★ 1.9k
8
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1
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3.0k
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Tool: Digital Expression Explorer
RNA-Seq GEO
updated 2.2 years ago by 44k • written 9.1 years ago by ★ 1.9k
0
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0
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1.5k
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Comment: C: Choosing the best alignment or aligner
6.1 years ago by mark.ziemann ★ 1.9k
1
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0
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2.0k
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Answer: A: Meta-Analysis p-value combining and adjusting
6.2 years ago by mark.ziemann ★ 1.9k
1
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0
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2.3k
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Comment: C: Looking for publicly available dataset.
6.5 years ago by mark.ziemann ★ 1.9k
0
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0
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1.4k
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Comment: C: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
6.7 years ago by mark.ziemann ★ 1.9k
0
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1
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1.4k
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Answer: A: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
6.7 years ago by mark.ziemann ★ 1.9k
0
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1
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2.5k
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Comment: C: WGBS - Methylation state at CpG to peak calls
7.0 years ago by mark.ziemann ★ 1.9k
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0
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6.2k
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Comment: C: Cut-off for genesets in GSEA
7.0 years ago by mark.ziemann ★ 1.9k
2
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0
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3.4k
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Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
7.0 years ago by mark.ziemann ★ 1.9k
2
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1
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3.4k
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Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
7.0 years ago by mark.ziemann ★ 1.9k
1
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1
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2.5k
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Comment: C: WGBS - Methylation state at CpG to peak calls
7.0 years ago by mark.ziemann ★ 1.9k
3
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0
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2.3k
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Answer: A: Looking for publicly available dataset.
7.0 years ago by mark.ziemann ★ 1.9k
2
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1
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6.2k
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Comment: C: Cut-off for genesets in GSEA
7.0 years ago by mark.ziemann ★ 1.9k
0
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0
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2.2k
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Comment: C: Download ENCODE Project BED files using REST API
7.3 years ago by mark.ziemann ★ 1.9k
2
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0
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2.2k
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Answer: A: Download ENCODE Project BED files using REST API
7.3 years ago by mark.ziemann ★ 1.9k
210 results • Page 2 of 5
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