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Comment: C: Choosing the best alignment or aligner
6.4 years ago by mark.ziemann ★ 2.0k
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2.1k
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Answer: A: Meta-Analysis p-value combining and adjusting
6.6 years ago by mark.ziemann ★ 2.0k
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2.5k
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Comment: C: Looking for publicly available dataset.
6.8 years ago by mark.ziemann ★ 2.0k
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1.6k
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Comment: C: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
7.1 years ago by mark.ziemann ★ 2.0k
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1
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1.6k
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Answer: A: Obtaining DEGs for bacterial RNA-sequencing study (levels of UV exposure)
7.1 years ago by mark.ziemann ★ 2.0k
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1
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2.7k
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Comment: C: WGBS - Methylation state at CpG to peak calls
7.4 years ago by mark.ziemann ★ 2.0k
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6.6k
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Comment: C: Cut-off for genesets in GSEA
7.4 years ago by mark.ziemann ★ 2.0k
2
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3.7k
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Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
7.4 years ago by mark.ziemann ★ 2.0k
2
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1
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3.7k
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Answer: A: Why do ribo-seq sequencing data have only a small proportion of uniquely mapped
7.4 years ago by mark.ziemann ★ 2.0k
1
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1
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2.7k
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Comment: C: WGBS - Methylation state at CpG to peak calls
7.4 years ago by mark.ziemann ★ 2.0k
3
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0
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2.5k
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Answer: A: Looking for publicly available dataset.
7.4 years ago by mark.ziemann ★ 2.0k
2
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1
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6.6k
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Comment: C: Cut-off for genesets in GSEA
7.4 years ago by mark.ziemann ★ 2.0k
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0
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2.4k
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Comment: C: Download ENCODE Project BED files using REST API
7.7 years ago by mark.ziemann ★ 2.0k
2
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0
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2.4k
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Answer: A: Download ENCODE Project BED files using REST API
7.7 years ago by mark.ziemann ★ 2.0k
3
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3
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2.4k
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Download ENCODE Project BED files using REST API
ChIP-Seq python
7.7 years ago by mark.ziemann ★ 2.0k
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1
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1.9k
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Comment: C: Recommended program for evaluating aligner sensitivity
7.8 years ago by mark.ziemann ★ 2.0k
1
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1
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3.8k
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Answer: A: Bismark Methyl-Seq Analysis
7.8 years ago by mark.ziemann ★ 2.0k
2
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1
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1.9k
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Answer: A: Recommended program for evaluating aligner sensitivity
7.8 years ago by mark.ziemann ★ 2.0k
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0
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3.3k
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Answer: A: Total RNA-seq miRNA detection query
7.8 years ago by mark.ziemann ★ 2.0k
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0
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1.6k
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Answer: A: CNV tool for small sequences
7.8 years ago by mark.ziemann ★ 2.0k
3
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1
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3.6k
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Answer: A: Why does RNA sequencing data has Thymine as opposed to Uracil? Theoretically, it
7.8 years ago by mark.ziemann ★ 2.0k
0
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0
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1.7k
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Comment: C: Workflow to store and integrate multiple NGS datasets for easy access and analys
7.8 years ago by mark.ziemann ★ 2.0k
0
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0
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2.5k
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Comment: C: How good are bwa-mem and stampy when dealing with low quality reads?
7.9 years ago by mark.ziemann ★ 2.0k
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1
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2.1k
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Comment: C: Chloroplast genome: Need to close 2 gaps (~2Kbp), any suggestions?
7.9 years ago by mark.ziemann ★ 2.0k
0
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0
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1.6k
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Comment: C: Filtering DMRs
7.9 years ago by mark.ziemann ★ 2.0k
0
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1
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4.3k
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Comment: C: DESeq without replicate nbinomTest method
8.7 years ago by mark.ziemann ★ 2.0k
4
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0
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7.1k
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Answer: A: An approach for gene ontology and up- / down-regulated genes (RNAseq)
8.7 years ago by mark.ziemann ★ 2.0k
3
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0
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9.9k
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Answer: C: Problem with creating GSEA rank file
8.8 years ago by mark.ziemann ★ 2.0k
2
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0
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6.0k
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Comment: C: GSEA for RNA seq
8.9 years ago by mark.ziemann ★ 2.0k
0
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0
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2.0k
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Comment: C: Determining Fold Enrichment of TFBS Over Control Sequences
8.9 years ago by mark.ziemann ★ 2.0k
0
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1
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4.3k
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Answer: A: DESeq without replicate nbinomTest method
8.9 years ago by mark.ziemann ★ 2.0k
0
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0
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2.2k
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Comment: C: Co-variants in differential expression analysis
8.9 years ago by mark.ziemann ★ 2.0k
0
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0
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1.6k
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Comment: C: Mapping reads for gap closure in de novo assembly
8.9 years ago by mark.ziemann ★ 2.0k
0
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0
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12k
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Comment: C: Bwa-Meth: Align And Tabulate Bs-Seq Reads
8.9 years ago by mark.ziemann ★ 2.0k
0
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1
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1.9k
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Comment: C: best microRNA normalisation method
9.2 years ago by mark.ziemann ★ 2.0k
1
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1
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3.8k
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Comment: C: troubleshooting bowtie2 low mapping rates
9.2 years ago by mark.ziemann ★ 2.0k
0
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1
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3.8k
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Comment: C: troubleshooting bowtie2 low mapping rates
9.2 years ago by mark.ziemann ★ 2.0k
0
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1
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3.8k
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Comment: C: troubleshooting bowtie2 low mapping rates
9.2 years ago by mark.ziemann ★ 2.0k
2
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0
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3.5k
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Answer: A: Is it ok to map RNA-seq reads on prokaryotic reference genome with bowtie2 ?
9.2 years ago by mark.ziemann ★ 2.0k
0
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0
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18k
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Comment: C: GSEA Preranked analysis on RNA-SEQ
9.4 years ago by mark.ziemann ★ 2.0k
1
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1
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18k
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Comment: C: GSEA Preranked analysis on RNA-SEQ
9.4 years ago by mark.ziemann ★ 2.0k
0
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0
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2.6k
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Answer: Answer: Align long nanopore minion cDNA reads
updated 2.5 years ago by 45k • written 9.6 years ago by ★ 2.0k
0
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1
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3.5k
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Answer: Answer: RNA-seq analysis without grouping data
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 2.0k
1
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0
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2.8k
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Answer: Answer: Extracting certain gene sets from RNA data
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 2.0k
4
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1
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5.5k
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Answer: Answer: combining multiple gz files in subfolders
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 2.0k
1
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0
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5.4k
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Comment: C: Removing low complexity reads from RNA-seq
9.7 years ago by mark.ziemann ★ 2.0k
0
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1
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5.4k
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Comment: C: Removing low complexity reads from RNA-seq
9.7 years ago by mark.ziemann ★ 2.0k
3
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0
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4.9k
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Answer: Answer: Very short reads (20-22) , bowtie and tophat not doing gapped alignment
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 2.0k
0
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1
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2.6k
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Answer: Answer: Problem with bad quality bases in RNAseq
updated 2.5 years ago by 45k • written 9.7 years ago by ★ 2.0k
1
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1
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3.3k
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Answer: A: Differential expression in edgeR with cuffdiff count output
9.7 years ago by mark.ziemann ★ 2.0k
224 results • Page 3 of 5
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