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2
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Answer: A: Download ENCODE Project BED files using REST API
7.4 years ago by mark.ziemann ★ 1.9k
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1.8k
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Comment: C: Recommended program for evaluating aligner sensitivity
7.4 years ago by mark.ziemann ★ 1.9k
1
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1
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3.6k
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Answer: A: Bismark Methyl-Seq Analysis
7.4 years ago by mark.ziemann ★ 1.9k
2
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1
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1.8k
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Answer: A: Recommended program for evaluating aligner sensitivity
7.4 years ago by mark.ziemann ★ 1.9k
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3.2k
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Answer: A: Total RNA-seq miRNA detection query
7.4 years ago by mark.ziemann ★ 1.9k
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1.5k
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Answer: A: CNV tool for small sequences
7.4 years ago by mark.ziemann ★ 1.9k
3
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1
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3.3k
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Answer: A: Why does RNA sequencing data has Thymine as opposed to Uracil? Theoretically, it
7.4 years ago by mark.ziemann ★ 1.9k
0
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1.6k
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Comment: C: Workflow to store and integrate multiple NGS datasets for easy access and analys
7.4 years ago by mark.ziemann ★ 1.9k
0
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2.3k
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Comment: C: How good are bwa-mem and stampy when dealing with low quality reads?
7.6 years ago by mark.ziemann ★ 1.9k
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1
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2.0k
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Comment: C: Chloroplast genome: Need to close 2 gaps (~2Kbp), any suggestions?
7.6 years ago by mark.ziemann ★ 1.9k
0
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1.5k
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Comment: C: Filtering DMRs
7.6 years ago by mark.ziemann ★ 1.9k
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1
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4.1k
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Comment: C: DESeq without replicate nbinomTest method
8.3 years ago by mark.ziemann ★ 1.9k
4
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6.5k
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Answer: A: An approach for gene ontology and up- / down-regulated genes (RNAseq)
8.4 years ago by mark.ziemann ★ 1.9k
3
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9.7k
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Answer: C: Problem with creating GSEA rank file
8.4 years ago by mark.ziemann ★ 1.9k
2
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5.9k
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Comment: C: GSEA for RNA seq
8.5 years ago by mark.ziemann ★ 1.9k
0
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1.9k
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Comment: C: Determining Fold Enrichment of TFBS Over Control Sequences
8.5 years ago by mark.ziemann ★ 1.9k
0
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1
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4.1k
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Answer: A: DESeq without replicate nbinomTest method
8.5 years ago by mark.ziemann ★ 1.9k
0
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0
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2.0k
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Comment: C: Co-variants in differential expression analysis
8.5 years ago by mark.ziemann ★ 1.9k
0
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1.6k
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Comment: C: Mapping reads for gap closure in de novo assembly
8.5 years ago by mark.ziemann ★ 1.9k
0
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0
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12k
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Comment: C: Bwa-Meth: Align And Tabulate Bs-Seq Reads
8.6 years ago by mark.ziemann ★ 1.9k
0
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1
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1.7k
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Comment: C: best microRNA normalisation method
8.8 years ago by mark.ziemann ★ 1.9k
1
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1
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3.6k
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Comment: C: troubleshooting bowtie2 low mapping rates
8.8 years ago by mark.ziemann ★ 1.9k
0
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1
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3.6k
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Comment: C: troubleshooting bowtie2 low mapping rates
8.8 years ago by mark.ziemann ★ 1.9k
0
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1
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3.6k
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Comment: C: troubleshooting bowtie2 low mapping rates
8.8 years ago by mark.ziemann ★ 1.9k
2
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3.2k
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Answer: A: Is it ok to map RNA-seq reads on prokaryotic reference genome with bowtie2 ?
8.8 years ago by mark.ziemann ★ 1.9k
0
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0
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18k
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Comment: C: GSEA Preranked analysis on RNA-SEQ
9.0 years ago by mark.ziemann ★ 1.9k
1
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1
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18k
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Comment: C: GSEA Preranked analysis on RNA-SEQ
9.0 years ago by mark.ziemann ★ 1.9k
0
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0
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2.5k
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Answer: Answer: Align long nanopore minion cDNA reads
updated 2.2 years ago by 44k • written 9.3 years ago by ★ 1.9k
0
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1
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3.3k
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Answer: Answer: RNA-seq analysis without grouping data
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.9k
1
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0
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2.7k
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Answer: Answer: Extracting certain gene sets from RNA data
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.9k
4
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1
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5.2k
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Answer: Answer: combining multiple gz files in subfolders
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.9k
1
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0
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5.2k
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Comment: C: Removing low complexity reads from RNA-seq
9.3 years ago by mark.ziemann ★ 1.9k
0
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1
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5.2k
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Comment: C: Removing low complexity reads from RNA-seq
9.3 years ago by mark.ziemann ★ 1.9k
3
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0
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4.7k
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Answer: Answer: Very short reads (20-22) , bowtie and tophat not doing gapped alignment
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.9k
0
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1
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2.4k
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Answer: Answer: Problem with bad quality bases in RNAseq
updated 2.1 years ago by 44k • written 9.3 years ago by ★ 1.9k
1
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1
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3.1k
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Answer: A: Differential expression in edgeR with cuffdiff count output
9.3 years ago by mark.ziemann ★ 1.9k
0
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0
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5.1k
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Answer: Answer: Problems with STAR mapping output
updated 24 months ago by 44k • written 9.3 years ago by ★ 1.9k
0
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1
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2.2k
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Answer: Answer: Strategies For De Novo Assembly Of A Reference
updated 23 months ago by 44k • written 9.4 years ago by ★ 1.9k
0
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1
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3.5k
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Comment: C: Counting reads for gene transcripts with overlapping loci
9.4 years ago by mark.ziemann ★ 1.9k
0
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0
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2.4k
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Comment: C: How can i retrieve all cds from a ensembl genetree？
9.4 years ago by mark.ziemann ★ 1.9k
0
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0
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2.5k
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Comment: Comment: Determine mutational profile from a BAM file?
updated 22 months ago by 44k • written 9.5 years ago by ★ 1.9k
1
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2
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2.5k
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Determine mutational profile from a BAM file?
RNA-Seq genome
updated 22 months ago by 44k • written 9.5 years ago by ★ 1.9k
1
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0
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2.2k
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Answer: Answer: what is applications of gene ranking except GSEA?
updated 22 months ago by 44k • written 9.6 years ago by ★ 1.9k
2
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0
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4.4k
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Answer: A: Comparing gene conservation across species
9.6 years ago by mark.ziemann ★ 1.9k
1
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1
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2.9k
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Answer: A: Promoter Motifs (+) and (-) strands
9.6 years ago by mark.ziemann ★ 1.9k
0
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0
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3.1k
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Answer: Answer: Get Allele Frequency of each SNP in RNASeq
updated 21 months ago by 44k • written 9.6 years ago by ★ 1.9k
0
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0
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2.9k
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Comment: Comment: Question: How to compare the gene expression signature of Primary tumor cell and
updated 22 months ago by 44k • written 9.6 years ago by ★ 1.9k
0
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1
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2.6k
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Answer: Answer: Finding ortholog transcript sequences after de novo transcriptome assembly
updated 22 months ago by 44k • written 9.6 years ago by ★ 1.9k
5
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0
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2.7k
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Answer: Answer: JAVA and NGS
updated 22 months ago by 44k • written 9.6 years ago by ★ 1.9k
0
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0
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1.8k
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Answer: Answer: Getting BLAST Clusters Classifier performance for Protein classes
updated 22 months ago by 44k • written 9.6 years ago by ★ 1.9k
210 results • Page 3 of 5
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