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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
18 hours ago by i.sudbery 20k
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269
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Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
20 hours ago by i.sudbery 20k
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292
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Comment: Comment: Biostatistics
updated 1 day ago by 44k • written 1 day ago by 20k
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247
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
8 days ago by i.sudbery 20k
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247
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Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
8 days ago by i.sudbery 20k
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475
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
14 days ago by i.sudbery 20k
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475
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Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
15 days ago by i.sudbery 20k
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1
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1.3k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
18 days ago by i.sudbery 20k
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1.3k
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Comment: Comment: dedup STAR transcriptome file using umi_tools
18 days ago by i.sudbery 20k
6
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1.3k
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Answer: Answer: dedup STAR transcriptome file using umi_tools
18 days ago by i.sudbery 20k
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0
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715
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
20 days ago by i.sudbery 20k
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263
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Answer: Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input
20 days ago by i.sudbery 20k
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693
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Comment: Comment: Question about edgeR p-values/FDR values
22 days ago by i.sudbery 20k
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2
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693
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Answer: Answer: Question about edgeR p-values/FDR values
23 days ago by i.sudbery 20k
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392
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Comment: Comment: Has this sequence really more then 70k perfect matches in the human genome?
24 days ago by i.sudbery 20k
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392
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Answer: Answer: Has this sequence really more then 70k perfect matches in the human genome?
24 days ago by i.sudbery 20k
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271
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Comment: Comment: error in DESeq2 Determines differentially expressed features from count tables
28 days ago by i.sudbery 20k
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654
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
28 days ago by i.sudbery 20k
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2
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654
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Answer: Answer: How the field has changes for the last 5 years, and 25 years (up to 2024)
29 days ago by i.sudbery 20k
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1
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698
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Answer: Answer: Why Are Transcripts Differentially Expressed but Not Genes in RNA-seq Analysis?
29 days ago by i.sudbery 20k
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340
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Answer: Answer: Outlier after DEseq2 in meta-analysis
5 weeks ago by i.sudbery 20k
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401
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Answer: Answer: Questions Regarding Normalization and Standardization in RNA-seq Differential An
5 weeks ago by i.sudbery 20k
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1.6k
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Comment: Comment: UMItools dedup deduplication taking too much time + RAM
6 weeks ago by i.sudbery 20k
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1
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702
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Comment: Comment: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
6 weeks ago by i.sudbery 20k
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2
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702
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Answer: Answer: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
7 weeks ago by i.sudbery 20k
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0
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855
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
7 weeks ago by i.sudbery 20k
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1
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855
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Answer: Answer: The Evolution of NGS: What’s New and What’s Next?
7 weeks ago by i.sudbery 20k
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0
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855
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Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
7 weeks ago by i.sudbery 20k
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1
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311
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Answer: Answer: Significant p values with non significant looking figures
8 weeks ago by i.sudbery 20k
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0
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465
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Comment: Comment: RNASeq Analysis: data from different library
8 weeks ago by i.sudbery 20k
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1
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465
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Comment: Comment: RNASeq Analysis: data from different library
8 weeks ago by i.sudbery 20k
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1
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419
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Comment: Comment: Poor dispersion fit in DESeq2
8 weeks ago by i.sudbery 20k
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1
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419
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Comment: Comment: Dispersion fit - thoughts?
8 weeks ago by i.sudbery 20k
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1.8k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
8 weeks ago by i.sudbery 20k
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0
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1.8k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
9 weeks ago by i.sudbery 20k
1
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0
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1.8k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
9 weeks ago by i.sudbery 20k
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0
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377
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Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
9 weeks ago by i.sudbery 20k
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1
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493
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Answer: Answer: Multiple SRR files correspond to the same GSM in GEO
9 weeks ago by i.sudbery 20k
1
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1
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377
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Answer: Answer: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
9 weeks ago by i.sudbery 20k
2
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0
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1.8k
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Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
9 weeks ago by i.sudbery 20k
2
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0
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1.1k
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Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
9 weeks ago by i.sudbery 20k
1
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1
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1.1k
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Answer: Answer: Differential expressed genes - much more DE genes for one factor in the additive
10 weeks ago by i.sudbery 20k
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1
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1.1k
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Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
10 weeks ago by i.sudbery 20k
4
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3
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656
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Answer: Answer: High Detection of Duplication in RNAseq dataset
10 weeks ago by i.sudbery 20k
3
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0
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445
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Answer: Answer: p value of significance for overlapping peaks
10 weeks ago by i.sudbery 20k
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0
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302
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Answer: Answer: Weird correlation between RIP-seq replicates
11 weeks ago by i.sudbery 20k
2
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1
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947
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Comment: Comment: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
11 weeks ago by i.sudbery 20k
2
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1
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441
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Comment: Comment: How to make the length of the CDS of my bed file divisible by 3?
3 months ago by i.sudbery 20k
1
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1
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441
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Comment: Comment: How to make the length of the CDS of my bed file divisible by 3?
3 months ago by i.sudbery 20k
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0
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1.2k
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Comment: Comment: How to solve DESeq2 Error in checkFullRank(modelMatrix) cause by biological repl
3 months ago by i.sudbery 20k
1,608 results • Page 1 of 33
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