Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
329
views
Answer: Answer: Difficulties to assess bulk RNA-seq results
4 days ago by i.sudbery 20k
0
votes
0
replies
378
views
Answer: Answer: DESeq2: error in checkFullRank(modelMatrix)
5 days ago by i.sudbery 20k
0
votes
0
replies
393
views
Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
5 days ago by i.sudbery 20k
0
votes
1
reply
393
views
Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
6 days ago by i.sudbery 20k
1
vote
0
replies
393
views
Comment: Comment: Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal
6 days ago by i.sudbery 20k
0
votes
0
replies
338
views
Comment: Comment: Biostatistics
updated 7 days ago by 44k • written 7 days ago by 20k
0
votes
0
replies
274
views
Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
14 days ago by i.sudbery 20k
0
votes
1
reply
274
views
Comment: Comment: Rapid BaseQ drop in adaptor regions with UMI
14 days ago by i.sudbery 20k
0
votes
0
replies
506
views
Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
20 days ago by i.sudbery 20k
0
votes
1
reply
506
views
Comment: Comment: Combining two closely related bacterial annotated genomes to analyze as one pool
21 days ago by i.sudbery 20k
3
votes
1
reply
1.3k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
24 days ago by i.sudbery 20k
1
vote
1
reply
1.3k
views
Comment: Comment: dedup STAR transcriptome file using umi_tools
24 days ago by i.sudbery 20k
6
votes
1
reply
1.3k
views
Answer: Answer: dedup STAR transcriptome file using umi_tools
24 days ago by i.sudbery 20k
1
vote
0
replies
740
views
Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
26 days ago by i.sudbery 20k
1
vote
0
replies
275
views
Answer: Answer: Using NumReads column of quants.genes.sf file to build DESeq2 input
26 days ago by i.sudbery 20k
0
votes
1
reply
758
views
Comment: Comment: Question about edgeR p-values/FDR values
28 days ago by i.sudbery 20k
1
vote
2
replies
758
views
Answer: Answer: Question about edgeR p-values/FDR values
28 days ago by i.sudbery 20k
0
votes
0
replies
416
views
Comment: Comment: Has this sequence really more then 70k perfect matches in the human genome?
4 weeks ago by i.sudbery 20k
0
votes
1
reply
416
views
Answer: Answer: Has this sequence really more then 70k perfect matches in the human genome?
4 weeks ago by i.sudbery 20k
0
votes
0
replies
283
views
Comment: Comment: error in DESeq2 Determines differentially expressed features from count tables
4 weeks ago by i.sudbery 20k
0
votes
0
replies
685
views
Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
4 weeks ago by i.sudbery 20k
8
votes
2
replies
685
views
Answer: Answer: How the field has changes for the last 5 years, and 25 years (up to 2024)
4 weeks ago by i.sudbery 20k
4
votes
1
reply
717
views
Answer: Answer: Why Are Transcripts Differentially Expressed but Not Genes in RNA-seq Analysis?
5 weeks ago by i.sudbery 20k
1
vote
1
reply
347
views
Answer: Answer: Outlier after DEseq2 in meta-analysis
6 weeks ago by i.sudbery 20k
0
votes
0
replies
411
views
Answer: Answer: Questions Regarding Normalization and Standardization in RNA-seq Differential An
6 weeks ago by i.sudbery 20k
0
votes
0
replies
1.7k
views
Comment: Comment: UMItools dedup deduplication taking too much time + RAM
7 weeks ago by i.sudbery 20k
1
vote
1
reply
711
views
Comment: Comment: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
7 weeks ago by i.sudbery 20k
2
votes
2
replies
711
views
Answer: Answer: Decision on Upregulated/Downregulated Genes in DE list- P-value and Log fold cha
7 weeks ago by i.sudbery 20k
0
votes
0
replies
872
views
Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
8 weeks ago by i.sudbery 20k
3
votes
1
reply
872
views
Answer: Answer: The Evolution of NGS: What’s New and What’s Next?
8 weeks ago by i.sudbery 20k
1
vote
0
replies
872
views
Comment: Comment: The Evolution of NGS: What’s New and What’s Next?
8 weeks ago by i.sudbery 20k
0
votes
1
reply
318
views
Answer: Answer: Significant p values with non significant looking figures
9 weeks ago by i.sudbery 20k
0
votes
0
replies
478
views
Comment: Comment: RNASeq Analysis: data from different library
9 weeks ago by i.sudbery 20k
0
votes
1
reply
478
views
Comment: Comment: RNASeq Analysis: data from different library
9 weeks ago by i.sudbery 20k
0
votes
1
reply
438
views
Comment: Comment: Poor dispersion fit in DESeq2
9 weeks ago by i.sudbery 20k
0
votes
1
reply
438
views
Comment: Comment: Dispersion fit - thoughts?
9 weeks ago by i.sudbery 20k
0
votes
0
replies
1.8k
views
Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
9 weeks ago by i.sudbery 20k
0
votes
0
replies
1.8k
views
Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
10 weeks ago by i.sudbery 20k
1
vote
0
replies
1.8k
views
Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
10 weeks ago by i.sudbery 20k
0
votes
0
replies
391
views
Comment: Comment: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
10 weeks ago by i.sudbery 20k
1
vote
1
reply
507
views
Answer: Answer: Multiple SRR files correspond to the same GSM in GEO
10 weeks ago by i.sudbery 20k
1
vote
1
reply
391
views
Answer: Answer: How to Handle and Merge Feature Counts for Mixed Single-End and Paired-End RNA-S
10 weeks ago by i.sudbery 20k
2
votes
0
replies
1.8k
views
Comment: Comment: Help Choosing a Workstation for a New Bioinformatics Service
10 weeks ago by i.sudbery 20k
2
votes
0
replies
1.2k
views
Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
10 weeks ago by i.sudbery 20k
1
vote
1
reply
1.2k
views
Answer: Answer: Differential expressed genes - much more DE genes for one factor in the additive
10 weeks ago by i.sudbery 20k
0
votes
1
reply
1.2k
views
Comment: Comment: Differential expressed genes - much more DE genes for one factor in the additive
10 weeks ago by i.sudbery 20k
4
votes
3
replies
665
views
Answer: Answer: High Detection of Duplication in RNAseq dataset
10 weeks ago by i.sudbery 20k
3
votes
0
replies
454
views
Answer: Answer: p value of significance for overlapping peaks
11 weeks ago by i.sudbery 20k
0
votes
0
replies
312
views
Answer: Answer: Weird correlation between RIP-seq replicates
11 weeks ago by i.sudbery 20k
2
votes
1
reply
958
views
Comment: Comment: If changing the RNA-Seq count normalisation method changes the DGE and downstrea
12 weeks ago by i.sudbery 20k
1,611 results • Page 1 of 33
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6