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2
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627
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Answer: Answer: Could I consider an ENCODE experiment with two library as two replicates for dif
20 months ago by i.sudbery 20k
3
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2.6k
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Answer: Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
20 months ago by i.sudbery 20k
6
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1
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1.2k
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Answer: Answer: kallisto -s o error
20 months ago by i.sudbery 20k
0
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1
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1.3k
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Comment: Comment: How to cut some part of the header of reads in FASTQ file?
21 months ago by i.sudbery 20k
2
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0
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1.8k
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Comment: Comment: 1 is not found in chromosome sizes file
21 months ago by i.sudbery 20k
0
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1
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1.4k
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Answer: Answer: Problem with universe argument in enrichKEGG
21 months ago by i.sudbery 20k
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0
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1.7k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
21 months ago by i.sudbery 20k
0
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1
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1.7k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
21 months ago by i.sudbery 20k
0
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1
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1.7k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
21 months ago by i.sudbery 20k
3
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1
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910
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Answer: Answer: Differential expression vs tissue specific expression
21 months ago by i.sudbery 20k
0
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0
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9.4k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
21 months ago by i.sudbery 20k
0
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0
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9.4k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
21 months ago by i.sudbery 20k
0
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1
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9.4k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
updated 21 months ago by 44k • written 21 months ago by 20k
0
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2
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9.4k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
21 months ago by i.sudbery 20k
0
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1
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9.4k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
21 months ago by i.sudbery 20k
8
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1
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9.4k
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Answer: Answer: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
21 months ago by i.sudbery 20k
2
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0
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1.3k
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Comment: Comment: Salmon TPM calculation constant
21 months ago by i.sudbery 20k
1
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0
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1.3k
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Answer: Answer: Comparing log2-fold changes to find elements with virtually the same log2-fold c
21 months ago by i.sudbery 20k
1
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1
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792
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Answer: Answer: how to decide the if the IDR result is good or not
21 months ago by i.sudbery 20k
6
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0
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1.2k
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Answer: Answer: Can FPKM data sets be of any use or are they trash?
21 months ago by i.sudbery 20k
1
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0
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809
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Comment: Comment: Gene expression normalization sample-wise or feature-wise? which one is the reco
21 months ago by i.sudbery 20k
0
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0
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916
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Comment: Comment: logFC is negative, need help to get it done
21 months ago by i.sudbery 20k
0
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1
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1.7k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
21 months ago by i.sudbery 20k
1
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1
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1.3k
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Comment: Comment: How should I deduce the variable from its variance and expectation in the `voom`
21 months ago by i.sudbery 20k
1
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0
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1.3k
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Comment: Comment: How should I deduce the variable from its variance and expectation in the `voom`
21 months ago by i.sudbery 20k
0
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1
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1.7k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
21 months ago by i.sudbery 20k
0
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0
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481
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Comment: Comment: Gene coverage issue in HG38
21 months ago by i.sudbery 20k
3
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1
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1.2k
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Answer: Answer: Do I need to adjust the pvalue if I am only going to test one gene from omics da
21 months ago by i.sudbery 20k
0
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0
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1.0k
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Comment: Comment: How to summarize the expression of a gene when having expression data from diffe
21 months ago by i.sudbery 20k
3
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2
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2.6k
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Comment: Comment: RNA Editing data from RNA-seq
22 months ago by i.sudbery 20k
1
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1
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1.2k
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Comment: Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
22 months ago by i.sudbery 20k
0
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0
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1.2k
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Comment: Comment: DESeq2 results function runs very slow on Windows 10
22 months ago by i.sudbery 20k
1
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1
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2.6k
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Comment: Comment: RNA Editing data from RNA-seq
22 months ago by i.sudbery 20k
1
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1
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1.2k
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Comment: Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
22 months ago by i.sudbery 20k
0
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0
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1.2k
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Comment: Comment: High downstream gene expression
22 months ago by i.sudbery 20k
0
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1
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1.1k
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Comment: Comment: RNASeq differential expression masked by pathways disregulation
22 months ago by i.sudbery 20k
2
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1
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1.2k
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Answer: Answer: High downstream gene expression
22 months ago by i.sudbery 20k
2
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0
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963
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Answer: Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
22 months ago by i.sudbery 20k
2
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0
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1.1k
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Answer: Answer: isoform compostion (psi) question
22 months ago by i.sudbery 20k
7
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0
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2.8k
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Answer: Answer: Hugely different results between edgeR and DESeq2
22 months ago by i.sudbery 20k
2
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0
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4.2k
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Answer: Answer: STAR aligner can't map too short reads
22 months ago by i.sudbery 20k
0
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0
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463
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Power calculations for differential ChIP
statistics power Chipseq
22 months ago by i.sudbery 20k
1
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0
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1.8k
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Comment: Comment: UMI-tools deduplication of reads with UMI at the start of the line
22 months ago by i.sudbery 20k
0
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1
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1.8k
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Comment: Comment: UMI-tools deduplication of reads with UMI at the start of the line
22 months ago by i.sudbery 20k
2
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1
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1.8k
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Answer: Answer: UMI-tools deduplication of reads with UMI at the start of the line
22 months ago by i.sudbery 20k
0
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1
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1.5k
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Comment: Comment: Removing umi split off as a separate fastq (RNA-seq)
22 months ago by i.sudbery 20k
1
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1
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1.5k
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Answer: Answer: Removing umi split off as a separate fastq (RNA-seq)
22 months ago by i.sudbery 20k
1
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1
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2.2k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
23 months ago by i.sudbery 20k
0
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0
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4.6k
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Comment: Comment: How to extract aligned reads that contain splice junctions from STAR
23 months ago by i.sudbery 20k
2
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1
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1.5k
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Comment: Comment: parallel for 10000 whole exome data
23 months ago by i.sudbery 20k
1,612 results • Page 7 of 33
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