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Answer: Answer: Could I consider an ENCODE experiment with two library as two replicates for dif
23 months ago by i.sudbery 21k
3
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0
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3.0k
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Answer: Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
23 months ago by i.sudbery 21k
6
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1.4k
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Answer: Answer: kallisto -s o error
23 months ago by i.sudbery 21k
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1
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1.4k
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Comment: Comment: How to cut some part of the header of reads in FASTQ file?
23 months ago by i.sudbery 21k
2
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0
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2.0k
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Comment: Comment: 1 is not found in chromosome sizes file
23 months ago by i.sudbery 21k
0
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1
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1.5k
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Answer: Answer: Problem with universe argument in enrichKEGG
23 months ago by i.sudbery 21k
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0
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1.9k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
23 months ago by i.sudbery 21k
0
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1.9k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
23 months ago by i.sudbery 21k
0
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1
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1.9k
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Comment: Comment: Should I use TPM or TMM to plot gene expression boxplots in RNAseq?
23 months ago by i.sudbery 21k
3
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1
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1.0k
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Answer: Answer: Differential expression vs tissue specific expression
23 months ago by i.sudbery 21k
0
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0
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10k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
23 months ago by i.sudbery 21k
0
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0
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10k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
23 months ago by i.sudbery 21k
0
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1
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10k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
updated 23 months ago by 44k • written 23 months ago by 21k
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2
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10k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
23 months ago by i.sudbery 21k
0
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1
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10k
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Comment: Comment: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
23 months ago by i.sudbery 21k
8
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1
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10k
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Answer: Answer: How to choose Normalization methods (TPM/RPKM/FPKM) for mRNA expression
23 months ago by i.sudbery 21k
2
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0
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1.5k
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Comment: Comment: Salmon TPM calculation constant
23 months ago by i.sudbery 21k
1
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0
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1.4k
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Answer: Answer: Comparing log2-fold changes to find elements with virtually the same log2-fold c
24 months ago by i.sudbery 21k
1
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1
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864
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Answer: Answer: how to decide the if the IDR result is good or not
24 months ago by i.sudbery 21k
6
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0
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1.3k
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Answer: Answer: Can FPKM data sets be of any use or are they trash?
24 months ago by i.sudbery 21k
1
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0
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902
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Comment: Comment: Gene expression normalization sample-wise or feature-wise? which one is the reco
24 months ago by i.sudbery 21k
0
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0
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1.0k
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Comment: Comment: logFC is negative, need help to get it done
24 months ago by i.sudbery 21k
0
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1
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1.9k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
2.0 years ago by i.sudbery 21k
1
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1
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1.5k
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Comment: Comment: How should I deduce the variable from its variance and expectation in the `voom`
2.0 years ago by i.sudbery 21k
1
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0
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1.5k
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Comment: Comment: How should I deduce the variable from its variance and expectation in the `voom`
2.0 years ago by i.sudbery 21k
0
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1
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1.9k
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
2.0 years ago by i.sudbery 21k
0
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0
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542
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Comment: Comment: Gene coverage issue in HG38
2.0 years ago by i.sudbery 21k
3
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1
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1.4k
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Answer: Answer: Do I need to adjust the pvalue if I am only going to test one gene from omics da
2.0 years ago by i.sudbery 21k
0
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0
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1.1k
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Comment: Comment: How to summarize the expression of a gene when having expression data from diffe
2.0 years ago by i.sudbery 21k
3
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2
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2.9k
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Comment: Comment: RNA Editing data from RNA-seq
2.0 years ago by i.sudbery 21k
1
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1
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1.3k
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Comment: Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
2.0 years ago by i.sudbery 21k
0
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0
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1.3k
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Comment: Comment: DESeq2 results function runs very slow on Windows 10
2.0 years ago by i.sudbery 21k
1
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1
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2.9k
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Comment: Comment: RNA Editing data from RNA-seq
2.0 years ago by i.sudbery 21k
1
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1
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1.3k
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Comment: Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
2.0 years ago by i.sudbery 21k
0
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0
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1.3k
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Comment: Comment: High downstream gene expression
2.0 years ago by i.sudbery 21k
0
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1
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1.2k
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Comment: Comment: RNASeq differential expression masked by pathways disregulation
2.0 years ago by i.sudbery 21k
2
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1
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1.3k
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Answer: Answer: High downstream gene expression
2.0 years ago by i.sudbery 21k
2
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0
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1.1k
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Answer: Answer: mirbase does not have miRNA annotation of my species, what are the alternatives?
2.0 years ago by i.sudbery 21k
2
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0
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1.3k
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Answer: Answer: isoform compostion (psi) question
2.1 years ago by i.sudbery 21k
7
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0
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3.1k
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Answer: Answer: Hugely different results between edgeR and DESeq2
2.1 years ago by i.sudbery 21k
2
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0
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4.9k
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Answer: Answer: STAR aligner can't map too short reads
2.1 years ago by i.sudbery 21k
0
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0
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541
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Power calculations for differential ChIP
statistics power Chipseq
2.1 years ago by i.sudbery 21k
1
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0
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1.9k
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Comment: Comment: UMI-tools deduplication of reads with UMI at the start of the line
2.1 years ago by i.sudbery 21k
0
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1
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1.9k
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Comment: Comment: UMI-tools deduplication of reads with UMI at the start of the line
2.1 years ago by i.sudbery 21k
2
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1
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1.9k
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Answer: Answer: UMI-tools deduplication of reads with UMI at the start of the line
2.1 years ago by i.sudbery 21k
0
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1
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1.7k
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Comment: Comment: Removing umi split off as a separate fastq (RNA-seq)
2.1 years ago by i.sudbery 21k
1
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1
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1.7k
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Answer: Answer: Removing umi split off as a separate fastq (RNA-seq)
2.1 years ago by i.sudbery 21k
1
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1
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2.5k
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Comment: Comment: How to make contrasts to find genes DE in one experimental group but NOT in othe
2.1 years ago by i.sudbery 21k
0
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0
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5.0k
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Comment: Comment: How to extract aligned reads that contain splice junctions from STAR
2.2 years ago by i.sudbery 21k
2
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1
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1.7k
views
Comment: Comment: parallel for 10000 whole exome data
2.2 years ago by i.sudbery 21k
1,662 results • Page 8 of 34
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