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Astalavista landscape AS gtf file output
rna-seq Astalavista
updated 21 months ago by • 0 • written 6.5 years ago by ▴ 170
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0
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4.3k
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Comment: C: Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
4.1 years ago by dina.hesham139 ▴ 170
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1
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4.3k
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Comment: C: Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
4.1 years ago by dina.hesham139 ▴ 170
0
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1
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4.3k
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Comment: C: Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
4.1 years ago by dina.hesham139 ▴ 170
3
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7
replies
4.3k
views
Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
RNA-Seq RSEM Log2(x+1) revert to x
updated 4.1 years ago by 3.3k • written 4.1 years ago by ▴ 170
0
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2
replies
3.9k
views
Comment: C: Mapping percent difference between hg38 and hg19
updated 5.0 years ago by 44k • written 8.9 years ago by ▴ 170
0
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1
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3.9k
views
Comment: C: Mapping percent difference between hg38 and hg19
updated 5.0 years ago by 44k • written 8.9 years ago by ▴ 170
0
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1
reply
20k
views
Comment: A: HISAT2 command help
updated 5.0 years ago by 44k • written 8.9 years ago by ▴ 170
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0
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9.6k
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Comment: A: Minimum requirements for a laptop for RNA-seq
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 170
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0
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6.0k
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Answer: A: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
updated 5.0 years ago by 44k • written 9.0 years ago by ▴ 170
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2
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2.8k
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Comment: C: RNAseq of total RNA
updated 5.1 years ago by 44k • written 9.1 years ago by ▴ 170
0
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1
reply
2.8k
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Comment: C: RNAseq of total RNA
updated 5.1 years ago by 44k • written 9.1 years ago by ▴ 170
0
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7
replies
1.9k
views
Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
RNA-Seq IsoformSwitchAnalyzeR
updated 5.5 years ago by ▴ 40 • written 5.6 years ago by ▴ 170
1
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4
replies
1.1k
views
IsoformSwitchAnalyzeR and cuffdiff data error
RNA-Seq IsoformSwitchAnalyzeR
updated 5.5 years ago by ★ 4.1k • written 5.5 years ago by ▴ 170
0
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0
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1.1k
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Comment: C: IsoformSwitchAnalyzeR and cuffdiff data error
5.5 years ago by dina.hesham139 ▴ 170
0
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1
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1.9k
views
Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
5.6 years ago by dina.hesham139 ▴ 170
0
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1
reply
5.5k
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Comment: C: Alternative splicing analysis following kallisto?
5.6 years ago by dina.hesham139 ▴ 170
0
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5
replies
2.8k
views
No CDS in Cuffdiff output !
RNA-Seq cummeRbund cuffdif
updated 6.3 years ago by 44k • written 8.8 years ago by ▴ 170
0
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0
replies
1.6k
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AStalavista for rice alternative splicing analysis?
RNA-Seq Alternative Splicing
6.5 years ago by dina.hesham139 ▴ 170
0
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0
replies
1.5k
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Comment: C: ASPLI (RNAseq AS) R package error
6.5 years ago by dina.hesham139 ▴ 170
0
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3
replies
1.5k
views
ASPLI (RNAseq AS) R package error
RNA-Seq R ASPLI
updated 6.5 years ago by 44k • written 6.5 years ago by ▴ 170
0
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1
reply
5.5k
views
Comment: C: Alternative splicing analysis following kallisto?
6.7 years ago by dina.hesham139 ▴ 170
10
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7
replies
5.5k
views
Alternative splicing analysis following kallisto?
RNA-Seq kallisto alternative splicing
updated 6.7 years ago by ★ 4.1k • written 6.7 years ago by ▴ 170
0
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0
replies
1.6k
views
Comment: C: RNAseq Rice: multiple condition testing and annotation
6.8 years ago by dina.hesham139 ▴ 170
0
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2
replies
1.6k
views
RNAseq Rice: multiple condition testing and annotation
RNA-Seq Rice
updated 6.8 years ago by 35k • written 6.8 years ago by ▴ 170
2
votes
3
replies
4.4k
views
"makeTxDbFromGFF" error ?!
RNA-Seq tximport
updated 7.1 years ago by 6.0k • written 7.1 years ago by ▴ 170
0
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0
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4.4k
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Comment: C: "makeTxDbFromGFF" error ?!
7.1 years ago by dina.hesham139 ▴ 170
1
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0
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3.4k
views
Comment: C: What to use after Salmon
7.7 years ago by dina.hesham139 ▴ 170
10
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3
replies
3.4k
views
What to use after Salmon
RNA-Seq
updated 7.7 years ago by 13k • written 7.7 years ago by ▴ 170
16
votes
7
replies
40k
views
6 follow
hg38 annotation file (gtf) UCSC format
RNA-Seq alignment
updated 2.4 years ago by 44k • written 8.9 years ago by ▴ 170
0
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0
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5.0k
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Comment: C: Visualization of rMATS output
8.7 years ago by dina.hesham139 ▴ 170
4
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3
replies
5.0k
views
Visualization of rMATS output
RNA-Seq
updated 14 months ago by ▴ 10 • written 8.7 years ago by ▴ 170
0
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1
reply
4.3k
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Comment: C: Annotation file (gff3) for hg38 to be used with MISO
8.7 years ago by dina.hesham139 ▴ 170
1
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4
replies
4.3k
views
Annotation file (gff3) for hg38 to be used with MISO
RNA-Seq
updated 8.7 years ago by 148k • written 8.7 years ago by ▴ 170
5
votes
1
reply
4.3k
views
Is there a way to add xs tag to a sam file?
rna-seq
updated 2.4 years ago by 44k • written 8.9 years ago by ▴ 170
0
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0
replies
3.1k
views
From HISAT2 to cuffdiff?
RNA-Seq
8.8 years ago by dina.hesham139 ▴ 170
0
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0
replies
3.9k
views
Comment: C: Mapping percent difference between hg38 and hg19
8.9 years ago by dina.hesham139 ▴ 170
0
votes
2
replies
3.9k
views
Comment: C: Mapping percent difference between hg38 and hg19
8.9 years ago by dina.hesham139 ▴ 170
1
vote
9
replies
3.9k
views
Mapping percent difference between hg38 and hg19
rna-seq alignment
8.9 years ago by dina.hesham139 ▴ 170
1
vote
1
reply
40k
views
Comment: C: hg38 annotation file (gtf) UCSC format
8.9 years ago by dina.hesham139 ▴ 170
0
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0
replies
1.2k
views
tophat2 incomplete mapping of reads
RNA-Seq
updated 2.4 years ago by 44k • written 9.1 years ago by ▴ 170
0
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1
reply
20k
views
Comment: C: HISAT2 command help
8.9 years ago by dina.hesham139 ▴ 170
0
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0
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20k
views
Comment: C: HISAT2 command help
8.9 years ago by dina.hesham139 ▴ 170
14
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17
replies
20k
views
6 follow
HISAT2 command help
RNA-Seq alignment
updated 11 months ago by ★ 4.3k • written 8.9 years ago by ▴ 170
0
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3
replies
4.8k
views
Can I use sorted bam files from STAR with Stringtie?
RNA-Seq Assembly
updated 2.4 years ago by 44k • written 9.0 years ago by ▴ 170
0
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0
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4.8k
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Comment: A: Can I use sorted bam files from STAR with Stringtie?
9.0 years ago by dina.hesham139 ▴ 170
0
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1
reply
9.6k
views
Comment: C: Minimum requirements for a laptop for RNA-seq
9.0 years ago by dina.hesham139 ▴ 170
1
vote
1
reply
1.9k
views
The suitable Amazon EC2 reserved instance for analyzing RNAseq dataset
RNA-Seq
updated 2.3 years ago by 44k • written 9.2 years ago by ▴ 170
5
votes
7
replies
2.8k
views
RNAseq of total RNA
RNA-Seq
updated 2.4 years ago by 44k • written 9.1 years ago by ▴ 170
3
votes
3
replies
4.0k
views
Filtering fastq (by quality score and length), optimum criteria?
RNA-Seq galaxy
updated 2.3 years ago by 44k • written 9.2 years ago by ▴ 170
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