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3
votes
3
replies
2.7k
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miRNA differential expression analysis, no significant adjusted p-values
R miRNA Differential Expression limma
updated 4.9 years ago by • 0 • written 8.3 years ago by ▴ 370
2
votes
2
replies
2.5k
views
Comment: C: mutually add a tab in the beggining of the header to make it a valid RMA format
updated 5.1 years ago by 44k • written 9.4 years ago by ▴ 370
0
votes
3
replies
3.2k
views
ReadVCF not reading samples
readVcf VariantAnnotation R
updated 22 months ago by 44k • written 9.5 years ago by ▴ 370
8
votes
1
reply
5.2k
views
Adding text to ideogram in ggbio (or other method recommendations)?
ideogram ggbio SNP
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 370
2
votes
0
replies
2.7k
views
Answer: A: miRNA differential expression analysis, no significant adjusted p-values
8.3 years ago by Alexander Skates ▴ 370
2
votes
2
replies
2.3k
views
Resources for genome-wide maps of transcription factor binding sites?
cistrome transcription-factor-binding-site
updated 22 months ago by 44k • written 9.5 years ago by ▴ 370
1
vote
1
reply
2.4k
views
Antibody Structure Prediction
antibody phyre expasy protein prediction
updated 9.0 years ago by ▴ 230 • written 9.0 years ago by ▴ 370
3
votes
4
replies
3.8k
views
Mapping TCGA hybridisation reference to sample barcode
RNA-Seq genotype TCGA
updated 3 months ago by 147k • written 9.4 years ago by ▴ 370
1
vote
1
reply
5.0k
views
Accounting for hidden confounding factors in eQTL analysis
eQTL RNA-Seq peer Matrix eQTL R
updated 9.2 years ago by ▴ 760 • written 9.3 years ago by ▴ 370
1
vote
1
reply
3.3k
views
Comment: C: error in rstudio
9.3 years ago by Alexander Skates ▴ 370
0
votes
0
replies
5.2k
views
Comment: C: At what point does does a departure from the normal constitute inflation (QQ plo
9.3 years ago by Alexander Skates ▴ 370
2
votes
3
replies
5.2k
views
At what point does does a departure from the normal constitute inflation (QQ plot)
qq-plot eQTL
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 370
2
votes
1
reply
12k
views
Answer: Answer: How to convert IMPUTE2 to VCF format
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 370
2
votes
1
reply
2.8k
views
Loading IMPUTE2 output into R for eQTL analysis
imputation eQTL R
9.3 years ago by Alexander Skates ▴ 370
0
votes
1
reply
3.3k
views
Answer: Answer: Reverse gene lookup from SNP
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 370
0
votes
1
reply
3.6k
views
Comment: C: Formatting genotype matrix for imputation
9.3 years ago by Alexander Skates ▴ 370
6
votes
4
replies
3.6k
views
Formatting genotype matrix for imputation
genotype-matrix IMPUTE2 PLINK
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 370
1
vote
1
reply
3.7k
views
Comment: Comment: How to find the SNP in promoter regions
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 370
1
vote
1
reply
1.9k
views
Answer: Answer: alleles calculation and snp genotype nomenclature
updated 2.1 years ago by 44k • written 9.3 years ago by ▴ 370
0
votes
0
replies
3.8k
views
Comment: C: Mapping TCGA hybridisation reference to sample barcode
9.4 years ago by Alexander Skates ▴ 370
1
vote
1
reply
3.1k
views
Comment: Comment: removing Control probesets
updated 24 months ago by 44k • written 9.4 years ago by ▴ 370
1
vote
2
replies
3.1k
views
Comment: Comment: removing Control probesets
updated 24 months ago by 44k • written 9.4 years ago by ▴ 370
1
vote
1
reply
3.1k
views
Comment: Comment: removing Control probesets
updated 24 months ago by 44k • written 9.4 years ago by ▴ 370
4
votes
1
reply
3.1k
views
Answer: Answer: removing Control probesets
updated 24 months ago by 44k • written 9.4 years ago by ▴ 370
1
vote
1
reply
2.6k
views
Comment: Comment: extracting chip id for a transcription factor
updated 24 months ago by 44k • written 9.4 years ago by ▴ 370
3
votes
2
replies
2.6k
views
Answer: Answer: extracting chip id for a transcription factor
updated 24 months ago by 44k • written 9.4 years ago by ▴ 370
1
vote
0
replies
8.0k
views
Comment: C: Splitting a large FASTA file into smaller FASTA files by Scaffolds
9.4 years ago by Alexander Skates ▴ 370
2
votes
0
replies
2.5k
views
Answer: Answer: Mapping old Ensembl transcript to a newer one
updated 23 months ago by 44k • written 9.4 years ago by ▴ 370
0
votes
0
replies
3.2k
views
Comment: C: ReadVCF not reading samples
9.5 years ago by Alexander Skates ▴ 370
0
votes
0
replies
3.2k
views
Comment: Comment: ReadVCF not reading samples
updated 22 months ago by 44k • written 9.5 years ago by ▴ 370
0
votes
0
replies
3.6k
views
Comment: C: Obtaining all SNPs in LD with tag SNP above threshold (D-prime/LOD) from 1000 Ge
9.5 years ago by Alexander Skates ▴ 370
1
vote
2
replies
3.6k
views
Obtaining all SNPs in LD with tag SNP above threshold (D-prime/LOD) from 1000 Genomes
SNP LD LOD 1000 Genome
updated 22 months ago by 44k • written 9.5 years ago by ▴ 370
2
votes
0
replies
8.3k
views
Answer: A: VCFTools not filtering out biallelic sites
9.6 years ago by Alexander Skates ▴ 370
2
votes
1
reply
8.3k
views
VCFTools not filtering out biallelic sites
Genotype VCFTools SNP
9.6 years ago by Alexander Skates ▴ 370
1
vote
0
replies
3.6k
views
Answer: Answer: 1000 Genome genotypes for list of snps
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 370
2
votes
3
replies
3.6k
views
1000 Genome genotypes for list of snps
1000 genome tabix genotype SNP vcftools
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 370
0
votes
0
replies
3.6k
views
Comment: C: 1000 Genome genotypes for list of snps
9.6 years ago by Alexander Skates ▴ 370
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