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14k
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Comment: C: how to make a .tbi file of .gtf.gz?
4.3 years ago by fwuffy ▴ 110
0
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0
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2.1k
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Comment: C: Detailed process for building snpEff database for NCBI RefSeq genomes?
4.3 years ago by fwuffy ▴ 110
1
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2
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2.1k
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Detailed process for building snpEff database for NCBI RefSeq genomes?
snpeff genome database
4.3 years ago by fwuffy ▴ 110
12
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2
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2.7k
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BWA Mem -M flag (mark split hits) effect on structural variation calling
bwa structural-variations delly
updated 5.0 years ago by ★ 1.9k • written 5.0 years ago by ▴ 110
5
votes
4
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1.8k
views
Looking for a database containing the least-conserved, most highly polymorphic SNPs (or regions) of the human genome (hg38)
conservation human SNP
updated 5.9 years ago by 7.0k • written 5.9 years ago by ▴ 110
0
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1
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1.8k
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Comment: C: Looking for a database containing the least-conserved, most highly polymorphic S
5.9 years ago by fwuffy ▴ 110
3
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2
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5.9k
views
Filtering VCF with vcf-tools using --maf=0.0001 filters out all homozygous calls ?!
vcf vcftools variants
updated 20 months ago by 44k • written 6.7 years ago by ▴ 110
0
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1
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2.4k
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Can anyone tell me why BCFTools Call would call a homozygous variant at this position with 1/2 alt variant reads?
bcftools vcf variants
6.7 years ago by fwuffy ▴ 110
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0
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3.2k
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Comment: C: Picard MarkDuplicates fatal error
6.7 years ago by fwuffy ▴ 110
0
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0
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3.2k
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Comment: C: Picard MarkDuplicates fatal error
6.7 years ago by fwuffy ▴ 110
5
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3
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3.2k
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Picard MarkDuplicates fatal error
Picard markduplicates
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 110
0
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0
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1.9k
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Comment: C: VCF PL Values not making sense
6.8 years ago by fwuffy ▴ 110
2
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3
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1.9k
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VCF PL Values not making sense
vcf
6.8 years ago by fwuffy ▴ 110
0
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2
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16k
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Answer: A: Number of Threads for BWA MEM
6.9 years ago by fwuffy ▴ 110
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0
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3.5k
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Comment: C: COSMIC hg38 free version
7.6 years ago by fwuffy ▴ 110
4
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3
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3.5k
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COSMIC hg38 free version
cosmic vcf cancer
updated 3.2 years ago by 44k • written 8.9 years ago by ▴ 110
0
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1
reply
2.7k
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SnpSift annotate reporting extra alleles not present in the input VCF
SnpEff SNP SnpSift
updated 23 months ago by 44k • written 9.4 years ago by ▴ 110
1
vote
3
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6.3k
views
Convert VCF to BCF
vcf bcf vcftools
updated 23 months ago by 44k • written 9.4 years ago by ▴ 110
15
votes
19
replies
9.6k
views
Samtools mpileup quality scores all zero
next-gen SNP alignment
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
1
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0
replies
9.6k
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Comment: C: Samtools mpileup quality scores all zero
9.5 years ago by fwuffy ▴ 110
0
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1
reply
9.6k
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Comment: Comment: Samtools mpileup quality scores all zero
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
0
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1
reply
9.6k
views
Comment: Comment: Samtools mpileup quality scores all zero
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
0
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0
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9.6k
views
Comment: Comment: Samtools mpileup quality scores all zero
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
0
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1
reply
9.6k
views
Comment: Comment: Samtools mpileup quality scores all zero
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
0
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1
reply
9.6k
views
Comment: C: Samtools mpileup quality scores all zero
9.5 years ago by fwuffy ▴ 110
1
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0
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9.6k
views
Comment: Comment: Samtools mpileup quality scores all zero
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
1
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0
replies
9.6k
views
Comment: Comment: Samtools mpileup quality scores all zero
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
1
vote
0
replies
9.6k
views
Comment: Comment: Samtools mpileup quality scores all zero
updated 23 months ago by 44k • written 9.5 years ago by ▴ 110
0
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1
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7.0k
views
Comment: Comment: Publicly Available Tumor/Normal Illumina Data For Evaluation Of Somatic Variant
updated 2.4 years ago by 44k • written 9.6 years ago by ▴ 110
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