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8
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2
replies
17k
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Answer: A: Questions about DAVID
updated 5.5 years ago by 45k • written 9.4 years ago by ▴ 700
4
votes
2
replies
5.8k
views
Answer: C: DESeq2: Is dispersion estimation gene-wise or gene- and condition-wise?
updated 5.5 years ago by 45k • written 9.5 years ago by ▴ 700
1
vote
1
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2.4k
views
Answer: Answer: Method to identify novel transcript based on strand-specific RNAseq
updated 2.9 years ago by 45k • written 9.5 years ago by ▴ 700
0
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0
replies
4.2k
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Comment: C: How to add Log2FoldChange as an argument for plotMA in DESeq2
updated 5.5 years ago by 45k • written 9.6 years ago by ▴ 700
0
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1
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2.1k
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Answer: A: Cuffcompare or Cuffmerge for tissue specificity?
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 700
1
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0
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3.6k
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Answer: A: Single-cell RNA-seq : for what questions ? and what are the classical pipelines
updated 5.6 years ago by 45k • written 9.6 years ago by ▴ 700
5
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0
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14k
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Answer: A: Batch effect in DESeq2 - multiple factor or SVA?
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 700
2
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0
replies
14k
views
Answer: A: Batch effect in DESeq2 - multiple factor or SVA?
updated 5.6 years ago by 45k • written 9.8 years ago by ▴ 700
0
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0
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12k
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Comment: C: RNA-seq HEK293T recent datasets
6.5 years ago by vivekbhr ▴ 700
0
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0
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2.4k
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Answer: A: hicAggregateContacts use with different HiC matrix format
6.5 years ago by vivekbhr ▴ 700
3
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1
reply
12k
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Answer: A: RNA-seq HEK293T recent datasets
7.8 years ago by vivekbhr ▴ 700
0
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1
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2.7k
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Answer: A: R reads q-score
8.2 years ago by vivekbhr ▴ 700
6
votes
0
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2.7k
views
Tool: deepTools2 : User-friendly tools for exploring deep-sequencing data
deeptools RNA-Seq next-gen ChIP-Seq
updated 24 months ago by 45k • written 8.3 years ago by ▴ 700
0
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0
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1.9k
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Answer: A: The best way to correlate some genome wide signal to histone modification signal
8.4 years ago by vivekbhr ▴ 700
0
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0
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3.2k
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Comment: C: HISAT2 (graph index) alignment over InDels
8.4 years ago by vivekbhr ▴ 700
4
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3
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3.2k
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HISAT2 (graph index) alignment over InDels
RNA-Seq alignment
updated 8.4 years ago by 105k • written 8.4 years ago by ▴ 700
0
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1
reply
6.5k
views
Comment: C: Deeptools: computeMatrix - Traceback
8.7 years ago by vivekbhr ▴ 700
0
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1
reply
6.5k
views
Comment: C: Deeptools: computeMatrix - Traceback
8.7 years ago by vivekbhr ▴ 700
2
votes
2
replies
9.3k
views
Answer: A: How do I find unmapped reads in my sam file?
8.7 years ago by vivekbhr ▴ 700
0
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0
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2.3k
views
Comment: C: number of grouping affect log2 fold change in DESeq2 analysis?
8.7 years ago by vivekbhr ▴ 700
0
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1
reply
9.2k
views
Answer: A: Extracting ids of a cluster in heatmap
8.7 years ago by vivekbhr ▴ 700
0
votes
0
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6.5k
views
Comment: C: Deeptools: computeMatrix - Traceback
8.7 years ago by vivekbhr ▴ 700
0
votes
2
replies
6.5k
views
Comment: C: Deeptools: computeMatrix - Traceback
8.7 years ago by vivekbhr ▴ 700
1
vote
0
replies
3.8k
views
Comment: C: circRNA- seq normalization
8.8 years ago by vivekbhr ▴ 700
1
vote
0
replies
11k
views
Answer: C: DESeq2 design and interaction terms
8.8 years ago by vivekbhr ▴ 700
0
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1
reply
6.8k
views
Comment: C: Bioconductor as a source for the dependencies of an R package?
8.9 years ago by vivekbhr ▴ 700
13
votes
0
replies
75k
views
Answer: A: Subsetting in R based on row name?
9.2 years ago by vivekbhr ▴ 700
1
vote
0
replies
7.5k
views
Answer: A: Annotate peaks based on Histone Mark
9.2 years ago by vivekbhr ▴ 700
0
votes
2
replies
6.8k
views
Answer: A: Bioconductor as a source for the dependencies of an R package?
9.3 years ago by vivekbhr ▴ 700
0
votes
0
replies
6.8k
views
Comment: C: Bioconductor as a source for the dependencies of an R package?
9.3 years ago by vivekbhr ▴ 700
0
votes
1
reply
6.8k
views
Comment: C: Bioconductor as a source for the dependencies of an R package?
9.3 years ago by vivekbhr ▴ 700
2
votes
1
reply
2.8k
views
Answer: Answer: How to determine quantitative differences of histone enrichment in enhancer regi
updated 2.9 years ago by 45k • written 9.4 years ago by ▴ 700
0
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0
replies
2.8k
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Comment: C: How to determine quantitative differences of histone enrichment in enhancer regi
9.4 years ago by vivekbhr ▴ 700
0
votes
1
reply
2.8k
views
Comment: C: How to determine quantitative differences of histone enrichment in enhancer regi
9.4 years ago by vivekbhr ▴ 700
0
votes
0
replies
2.3k
views
Comment: C: How should I interpret these pairs of mapped CAGE reads differing in position by
9.4 years ago by vivekbhr ▴ 700
0
votes
1
reply
2.3k
views
Comment: C: How should I interpret these pairs of mapped CAGE reads differing in position by
9.4 years ago by vivekbhr ▴ 700
0
votes
0
replies
5.8k
views
Comment: C: DESeq2: Is dispersion estimation gene-wise or gene- and condition-wise?
9.4 years ago by vivekbhr ▴ 700
1
vote
0
replies
4.7k
views
Answer: A: How to generate a pie chart of genomic annotations of ChIP peaks
9.5 years ago by vivekbhr ▴ 700
0
votes
0
replies
2.9k
views
Answer: A: Tophat 2 alignment error
9.5 years ago by vivekbhr ▴ 700
0
votes
0
replies
2.1k
views
Comment: C: Cuffcompare or Cuffmerge for tissue specificity?
9.6 years ago by vivekbhr ▴ 700
0
votes
0
replies
2.4k
views
Answer: A: Issue with barplot ggplot2
9.6 years ago by vivekbhr ▴ 700
2
votes
0
replies
3.1k
views
Comment: C: bioconductor promoter annotation for mm9
9.8 years ago by vivekbhr ▴ 700
3
votes
1
reply
4.7k
views
Answer: Answer: Microarray Time series data analysis through limma ?
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 700
0
votes
0
replies
6.7k
views
Comment: Comment: R: Difference between heatmap, heatmap.plus and heatmap.2
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 700
2
votes
0
replies
6.7k
views
Answer: Answer: R: Difference between heatmap, heatmap.plus and heatmap.2
updated 2.7 years ago by 45k • written 9.8 years ago by ▴ 700
0
votes
2
replies
4.2k
views
Answer: A: How to add Log2FoldChange as an argument for plotMA in DESeq2
9.8 years ago by vivekbhr ▴ 700
1
vote
1
reply
14k
views
Comment: C: Batch effect in DESeq2 - multiple factor or SVA?
9.8 years ago by vivekbhr ▴ 700
2
votes
0
replies
1.9k
views
Answer: A: Microarray data analysis
9.8 years ago by vivekbhr ▴ 700
0
votes
0
replies
8.8k
views
Answer: A: How to remove non-unique mapping reads with Hisat?
10.0 years ago by vivekbhr ▴ 700
0
votes
1
reply
2.6k
views
Comment: C: Allelic association tests for polyploid data
10.0 years ago by vivekbhr ▴ 700
54 results • Page 1 of 2
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