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5
votes
4
replies
2.0k
views
Fastq reads mapped to the desired position on reference genome
reference-genome Fastq BWA Mapping
updated 2.2 years ago by 44k • written 9.5 years ago by ▴ 30
0
votes
2
replies
1.0k
views
Removal of sequences that is partial of a longer sequences in multifasta file
sequence
updated 4.7 years ago by 44k • written 4.7 years ago by ▴ 30
0
votes
0
replies
490
views
Elongation factor-alpha gene database
sequence gene database
4.8 years ago by Louis Kok ▴ 30
0
votes
0
replies
1.3k
views
Comment: C: Issues in running command line blastn with -task blastn-short option
4.9 years ago by Louis Kok ▴ 30
1
vote
1
reply
1.3k
views
Comment: C: Issues in running command line blastn with -task blastn-short option
4.9 years ago by Louis Kok ▴ 30
0
votes
0
replies
1.3k
views
Comment: C: Issues in running command line blastn with -task blastn-short option
4.9 years ago by Louis Kok ▴ 30
0
votes
1
reply
1.3k
views
Comment: C: Issues in running command line blastn with -task blastn-short option
4.9 years ago by Louis Kok ▴ 30
1
vote
9
replies
1.3k
views
Issues in running command line blastn with -task blastn-short option
blast ncbi
4.9 years ago by Louis Kok ▴ 30
0
votes
1
reply
2.3k
views
Comment: C: Low quality bases at the starts of HiSeq 2 x 100bp reads
updated 5.1 years ago by 44k • written 9.0 years ago by ▴ 30
0
votes
1
reply
2.3k
views
Comment: C: Low quality bases at the starts of HiSeq 2 x 100bp reads
updated 5.1 years ago by 44k • written 9.0 years ago by ▴ 30
0
votes
0
replies
846
views
Download complete list of bacterial and eukaryotic species from NIH Human Microbiome Project
NIH Human Microbiome
5.3 years ago by Louis Kok ▴ 30
4
votes
3
replies
2.5k
views
Column explanation for repeat database from UCSC
repeats UCSC RMSK
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 30
0
votes
0
replies
2.5k
views
Comment: C: Column explanation for repeat database from UCSC
5.5 years ago by Louis Kok ▴ 30
0
votes
3
replies
3.4k
views
BLAST result is different between Sanger forward and reverse reads
Sanger BLAST
updated 2.2 years ago by 44k • written 9.5 years ago by ▴ 30
5
votes
5
replies
4.1k
views
samtools flagstat result is different from samtools view result
SAMtools
updated 5.6 years ago by ▴ 50 • written 8.8 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Samtools mpileup - Sudden decrease of coverage at homopolymer regions
samtools mapping mpileup
updated 5.7 years ago by 88k • written 5.7 years ago by ▴ 30
7
votes
3
replies
1.6k
views
Extracting the coordinates for a specific base from multifasta
sequence fasta
updated 6.1 years ago by 21k • written 6.1 years ago by ▴ 30
2
votes
3
replies
4.8k
views
Possible reason for no peaks generated by MACS2
macs ChIP-Seq
updated 6.2 years ago by 20 • written 6.2 years ago by ▴ 30
1
vote
5
replies
2.1k
views
Viewing the sai file generated using bwa
bwa mapping
updated 6.5 years ago by ▴ 10 • written 6.5 years ago by ▴ 30
0
votes
1
reply
2.1k
views
Comment: C: Viewing the sai file generated using bwa
6.5 years ago by Louis Kok ▴ 30
0
votes
2
replies
3.8k
views
Hierarchical ranking of gene ontology
Gene Ontology
8.6 years ago by Louis Kok ▴ 30
0
votes
0
replies
3.8k
views
Comment: C: 16S rRNA database for human clinical pathogens?
8.8 years ago by Louis Kok ▴ 30
4
votes
2
replies
3.8k
views
16S rRNA database for human clinical pathogens?
16S pathogens human database
updated 8.8 years ago by ★ 4.0k • written 8.8 years ago by ▴ 30
0
votes
0
replies
4.1k
views
Comment: C: samtools flagstat result is different from samtools view result
8.8 years ago by Louis Kok ▴ 30
0
votes
0
replies
2.2k
views
Comment: C: Downloading the raw 16S amplicon data for all saliva samples from the Human Micr
8.8 years ago by Louis Kok ▴ 30
0
votes
0
replies
5.9k
views
Comment: C: How to creat a phylogenetic tree for SPECIES?
8.8 years ago by Louis Kok ▴ 30
0
votes
0
replies
3.6k
views
Comment: C: TargetP Error: zero output generated
8.8 years ago by Louis Kok ▴ 30
0
votes
0
replies
1.9k
views
Comment: C: How to validate genes identified computationally
8.8 years ago by Louis Kok ▴ 30
0
votes
1
reply
5.9k
views
Comment: C: How to creat a phylogenetic tree for SPECIES?
8.8 years ago by Louis Kok ▴ 30
0
votes
0
replies
1.9k
views
Comment: C: the output of denovo assembly metagenomics
8.8 years ago by Louis Kok ▴ 30
0
votes
0
replies
1.9k
views
One read of the pair-ended reads is not able to map to the region when the reference is shorter using BWA
BWA Mapping Pair-ended reads
8.8 years ago by Louis Kok ▴ 30
0
votes
4
replies
3.6k
views
TargetP Error: zero output generated
targetp
updated 2.4 years ago by 44k • written 9.0 years ago by ▴ 30
1
vote
0
replies
1.8k
views
minimal Illumina read length acceptable for microbial diversity analysis
read-length HiSeq2500 Illumina metagenomics
updated 2.5 years ago by 44k • written 8.9 years ago by ▴ 30
3
votes
5
replies
7.3k
views
Salvage barcode undetermined reads from Illumina HiSeq 2500 2 x 100 bp pair-ended runs after demultiplexing
demultiplexing Illumina undetermined barcode
updated 2.4 years ago by 44k • written 9.0 years ago by ▴ 30
2
votes
4
replies
2.3k
views
Low quality bases at the starts of HiSeq 2 x 100bp reads
HiSeq base-quality
updated 2.4 years ago by 44k • written 9.0 years ago by ▴ 30
0
votes
0
replies
1.5k
views
Parameters cutoff for extraction of TRUE Short Tandem Repeats (STR) from lobSTR result
Genotyping STR short-tandem-repeat
updated 2.5 years ago by 44k • written 9.4 years ago by ▴ 30
0
votes
1
reply
3.4k
views
Comment: Comment: BLAST result is different between Sanger forward and reverse reads
updated 2.2 years ago by 44k • written 9.5 years ago by ▴ 30
0
votes
1
reply
6.4k
views
Comment: C: How to interpret the outputs generated from bamtobed using BedTools?
9.5 years ago by Louis Kok ▴ 30
0
votes
1
reply
6.4k
views
Comment: C: How to interpret the outputs generated from bamtobed using BedTools?
9.5 years ago by Louis Kok ▴ 30
3
votes
5
replies
6.4k
views
How to interpret the outputs generated from bamtobed using BedTools?
bed Bedtools BAM bamtobed
updated 2.1 years ago by 44k • written 9.5 years ago by ▴ 30
0
votes
0
replies
2.5k
views
Obtain heterozyous/IUPAC consensus sequences from multiple sequence alignment
multiple-sequence-alignment IUPAC heterozygous
updated 2.4 years ago by 44k • written 9.5 years ago by ▴ 30
4
votes
3
replies
15k
views
Multiple asterisks inside amino acid fasta sequences
amino-acid protein sequence fasta
updated 2.4 years ago by 44k • written 9.5 years ago by ▴ 30
0
votes
0
replies
10k
views
Comment: Comment: How To Create Masked Genome?
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 30
0
votes
1
reply
10k
views
Comment: Comment: How To Create Masked Genome?
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 30
0
votes
1
reply
10k
views
Comment: Comment: How To Create Masked Genome?
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 30
5
votes
3
replies
7.8k
views
Convert alignment in Fasta/Clustal format to SAM/BAM file
SAM BAM Clustal alignment
updated 2.5 years ago by 44k • written 9.7 years ago by ▴ 30
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