Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
2
votes
2
replies
343
views
dbNSFP4.7a database format to Annovar Format?
snp annovar NGS dbNSFP
updated 6 months ago by 44k • written 6 months ago by ▴ 50
1
vote
1
reply
912
views
WisecondorX (NIPT) np.array( ValueError)?
numpy NGS WisecondorX NIPT
updated 9 months ago by 147k • written 19 months ago by ▴ 50
1
vote
1
reply
5.1k
views
bcl2fastq error? (bcl2fastq::common::InputDataError)
bcl2fastq nextseq illumina fastq
updated 4.1 years ago by 44k • written 4.1 years ago by ▴ 50
4
votes
2
replies
987
views
How to get a report like stuff of a bam file how many percent of the exons are coverred?
bam exon NGS miseq
updated 6.4 years ago by 47k • written 6.4 years ago by ▴ 50
1
vote
3
replies
2.5k
views
How to Get only one annotation with the SnpEff annotation?
SNP annotation SnpEff variation
updated 6.4 years ago by 164k • written 6.4 years ago by ▴ 50
0
votes
0
replies
2.5k
views
Comment: C: How to Get only one annotation with the SnpEff annotation?
6.4 years ago by Clark_BioMorgan ▴ 50
1
vote
1
reply
1.7k
views
How to get all variants in original BAM file with HaplotypeCaller? (No correction and BAMout)
variant calling haplotypecaller sequencing bamout
6.4 years ago by Clark_BioMorgan ▴ 50
0
votes
9
replies
1.8k
views
Is there a way to save a specific Gene in IGV of a whole exome sample?
BAM IGV sequence
updated 6.5 years ago by ★ 2.4k • written 6.5 years ago by ▴ 50
0
votes
4
replies
1.8k
views
Comment: C: Is there a way to save a specific Gene in IGV of a whole exome sample?
6.5 years ago by Clark_BioMorgan ▴ 50
0
votes
0
replies
2.7k
views
Comment: C: No mutations in BAM (IGV) but a mutation in final VCF?
6.6 years ago by Clark_BioMorgan ▴ 50
1
vote
1
reply
2.7k
views
Comment: C: No mutations in BAM (IGV) but a mutation in final VCF?
6.6 years ago by Clark_BioMorgan ▴ 50
3
votes
9
replies
2.7k
views
No mutations in BAM (IGV) but a mutation in final VCF?
BAM IGV Variant Calling GATK HaplotypeCaller
updated 6.6 years ago by 47k • written 6.6 years ago by ▴ 50
0
votes
2
replies
2.7k
views
Comment: C: No mutations in BAM (IGV) but a mutation in final VCF?
6.6 years ago by Clark_BioMorgan ▴ 50
1
vote
2
replies
2.5k
views
Annovar annotation with refGene Database How to Dismiss Exon number and Gene Symbol from AAchange Column?
annovar refGene database Variant calling AAchange
updated 6.8 years ago by 20 • written 6.8 years ago by ▴ 50
0
votes
1
reply
2.4k
views
Comment: C: Only the longest transcript while annotating with Annovar?
6.8 years ago by Clark_BioMorgan ▴ 50
6
votes
3
replies
2.4k
views
Only the longest transcript while annotating with Annovar?
Annovar annotation SNP transcript refGene
updated 6.8 years ago by 88k • written 6.8 years ago by ▴ 50
1
vote
1
reply
1.5k
views
What is the most usefull and up to date Prokaryotic Genome annotation Pipeline?
genome annotation NGS prokaryote WGS
updated 7.1 years ago by 8.7k • written 7.1 years ago by ▴ 50
1
vote
1
reply
1.6k
views
Is it possible to manipulate Chromatogram ?
chromatogram sanger abi fastq
updated 20 months ago by 44k • written 7.2 years ago by ▴ 50
0
votes
1
reply
1.5k
views
Comment: C: Viral Whole genome Deep Sequencing within Human Host
7.3 years ago by Clark_BioMorgan ▴ 50
0
votes
3
replies
1.5k
views
Viral Whole genome Deep Sequencing within Human Host
genome sequencing next-gen virus deep sequencing
7.3 years ago by Clark_BioMorgan ▴ 50
0
votes
1
reply
2.2k
views
Comment: C: REsequencing Genome Assembly and Functional Gene annotation workflow?
7.4 years ago by Clark_BioMorgan ▴ 50
4
votes
8
replies
2.2k
views
REsequencing Genome Assembly and Functional Gene annotation workflow?
resequencing NGS genome assembly gene annotation
updated 7.4 years ago by ▴ 290 • written 7.4 years ago by ▴ 50
0
votes
1
reply
2.2k
views
Comment: C: REsequencing Genome Assembly and Functional Gene annotation workflow?
7.4 years ago by Clark_BioMorgan ▴ 50
1
vote
1
reply
2.2k
views
Comment: C: REsequencing Genome Assembly and Functional Gene annotation workflow?
7.4 years ago by Clark_BioMorgan ▴ 50
0
votes
0
replies
2.2k
views
Comment: C: Downloading BRCA sequence data?
8.1 years ago by Clark_BioMorgan ▴ 50
0
votes
0
replies
2.2k
views
Comment: C: Downloading BRCA sequence data?
8.1 years ago by Clark_BioMorgan ▴ 50
2
votes
4
replies
2.2k
views
Downloading BRCA sequence data?
sequence BRCA
updated 16 months ago by 44k • written 8.1 years ago by ▴ 50
1
vote
2
replies
1.9k
views
Presenting Metagenomic NGS results with too many species?
metagenomic NGS species presentation article
updated 8.2 years ago by 11k • written 8.2 years ago by ▴ 50
0
votes
0
replies
1.5k
views
Comment: C: Getting specific genes' sequences of some fungi species?
8.2 years ago by Clark_BioMorgan ▴ 50
0
votes
2
replies
1.5k
views
Getting specific genes' sequences of some fungi species?
gene sequence genbank fungi
8.2 years ago by Clark_BioMorgan ▴ 50
28
votes
12
replies
6.9k
views
Does anyone use Python for variant calling?
python SNP calling NGS variant
updated 8.5 years ago by ▴ 870 • written 8.5 years ago by ▴ 50
0
votes
1
reply
6.9k
views
Answer: A: Does anyone use Python for variant calling?
8.5 years ago by Clark_BioMorgan ▴ 50
1
vote
3
replies
3.4k
views
USEARCH, UPARSE, What are they good at?
usearch uparse 16s rrna metagenomics
updated 8.6 years ago by 11k • written 8.6 years ago by ▴ 50
2
votes
1
reply
2.9k
views
How can I classify OTUs to "SPECIES" level with mothur?
mothur OTU species 16s rRNA
updated 8.6 years ago by ▴ 870 • written 8.6 years ago by ▴ 50
0
votes
1
reply
2.4k
views
Comment: C: what would be the best coverage for "total length (Mb): 4.21561" of a bacterial
8.6 years ago by Clark_BioMorgan ▴ 50
0
votes
6
replies
2.4k
views
what would be the best coverage for "total length (Mb): 4.21561" of a bacterial genome sequenceing?
genome sequencing ngs bacteria hiseq
updated 8.6 years ago by 147k • written 8.6 years ago by ▴ 50
0
votes
1
reply
2.4k
views
Comment: C: what would be the best coverage for "total length (Mb): 4.21561" of a bacterial
8.6 years ago by Clark_BioMorgan ▴ 50
0
votes
0
replies
2.3k
views
Comment: C: BCF file is too big? (from 3,73 GB sorted.bam file to over 200 GB BCF)
8.6 years ago by Clark_BioMorgan ▴ 50
2
votes
2
replies
2.3k
views
BCF file is too big? (from 3,73 GB sorted.bam file to over 200 GB BCF)
alignment next-gen SNP
updated 8.6 years ago by ▴ 370 • written 8.6 years ago by ▴ 50
0
votes
0
replies
2.0k
views
Comment: C: Variant Calling Workflow by Python?
8.6 years ago by Clark_BioMorgan ▴ 50
0
votes
2
replies
2.0k
views
Variant Calling Workflow by Python?
SNP NGS
8.6 years ago by Clark_BioMorgan ▴ 50
1
vote
1
reply
2.8k
views
How to create OTUs from 16S rRNA sequence FASTA file to species level with metagenomic data analysis? (Step by Step)
sequencing next-gen
8.7 years ago by Clark_BioMorgan ▴ 50
42 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6